Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 The Blocks database--a system for protein classification.

Literature DB >> 8594578

The Blocks database--a system for protein classification.

S Pietrokovski¹, J G Henikoff, S Henikoff.

Abstract

The Blocks Database contains multiple alignments of conserved regions in protein families. The database can be searched by e-mail and World Wide Web(WWW) servers (http://blocks.fhcrc.org/help) to classify protein and nucleotide sequences.

Mesh：

Substances：
Proteins

Year: 1996 PMID： 8594578 PMCID： PMC145590 DOI： 10.1093/nar/24.1.197

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

20 in total

1. Comparison of methods for searching protein sequence databases.

Authors: W R Pearson
Journal: Protein Sci Date: 1995-06 Impact factor: 6.725

2. Predictive motifs derived from cytosine methyltransferases.

Authors: J Pósfai; A S Bhagwat; G Pósfai; R J Roberts
Journal: Nucleic Acids Res Date: 1989-04-11 Impact factor: 16.971

3. Profile analysis: detection of distantly related proteins.

Authors: M Gribskov; A D McLachlan; D Eisenberg
Journal: Proc Natl Acad Sci U S A Date: 1987-07 Impact factor: 11.205

4. PROSITE: recent developments.

Authors: A Bairoch; P Bucher
Journal: Nucleic Acids Res Date: 1994-09 Impact factor: 16.971

5. PRINTS--a database of protein motif fingerprints.

Authors: T K Attwood; M E Beck; A J Bleasby; D J Parry-Smith
Journal: Nucleic Acids Res Date: 1994-09 Impact factor: 16.971

6. The SBASE protein domain library, release 3.0: a collection of annotated protein sequence segments.

Authors: S Pongor; Z Hátsági; K Degtyarenko; P Fábián; V Skerl; H Hegyi; J Murvai; V Bevilacqua
Journal: Nucleic Acids Res Date: 1994-09 Impact factor: 16.971

7. Modular arrangement of proteins as inferred from analysis of homology.

Authors: E L Sonnhammer; D Kahn
Journal: Protein Sci Date: 1994-03 Impact factor: 6.725

8. Position-based sequence weights.

Authors: S Henikoff; J G Henikoff
Journal: J Mol Biol Date: 1994-11-04 Impact factor: 5.469

9. Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks.

Authors: R L Tatusov; S F Altschul; E V Koonin
Journal: Proc Natl Acad Sci U S A Date: 1994-12-06 Impact factor: 11.205

10. Metal-catalyzed oxidation of Fe2+ dehydrogenases. Consensus target sequence between propanediol oxidoreductase of Escherichia coli and alcohol dehydrogenase II of Zymomonas mobilis.

Authors: E Cabiscol; J Aguilar; J Ros
Journal: J Biol Chem Date: 1994-03-04 Impact factor: 5.157

22 in total

1. In silico characterization and comparative genomic analysis of the Culex quinquefasciatus glutathione S-transferase (GST) supergene family.

Authors: B P Niranjan Reddy; G B K S Prasad; K Raghavendra
Journal: Parasitol Res Date: 2011-04-15 Impact factor: 2.289

2. Superior performance in protein homology detection with the Blocks Database servers.

Authors: S Henikoff; S Pietrokovski; J G Henikoff
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

3. Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences.

Authors: T D Schneider
Journal: Nucleic Acids Res Date: 1997-11-01 Impact factor: 16.971

4. The directory of P450-containing systems in 1996.

Authors: P Fábián; K N Degtyarenko
Journal: Nucleic Acids Res Date: 1997-01-01 Impact factor: 16.971

5. The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments.

Authors: P Fábián; J Murvai; Z Hátsági; K Vlahovicek; H Hegyi; S Pongor
Journal: Nucleic Acids Res Date: 1997-01-01 Impact factor: 16.971

6. Novel developments with the PRINTS protein fingerprint database.

Authors: T K Attwood; M E Beck; A J Bleasby; K Degtyarenko; A D Michie; D J Parry-Smith
Journal: Nucleic Acids Res Date: 1997-01-01 Impact factor: 16.971

7. Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight?

Authors: J S Fetrow; N Siew; J A Di Gennaro; M Martinez-Yamout; H J Dyson; J Skolnick
Journal: Protein Sci Date: 2001-05 Impact factor: 6.725