Literature DB >> 8593614

The Genexpress Index: a resource for gene discovery and the genic map of the human genome.

R Houlgatte1, R Mariage-Samson, S Duprat, A Tessier, S Bentolila, B Lamy, C Auffray.   

Abstract

Detailed analysis of a set of 18,698 sequences derived from both ends of 10,979 human skeletal muscle and brain cDNA clones defined 6676 functional families, characterized by their sequence signatures over 5750 distinct human gene transcripts. About half of these genes have been assigned to specific chromosomes utilizing 2733 eSTS markers, the polymerase chain reaction, and DNA from human-rodent somatic cell hybrids. Sequence and clone clustering and a functional classification together with comprehensive data base searches and annotations made it possible to develop extensive sequence and map cross-indexes, define electronic expression profiles, identify a new set of overlapping genes, and provide numerous new candidate genes for human pathologies.

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Year:  1995        PMID: 8593614     DOI: 10.1101/gr.5.3.272

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  17 in total

1.  STACK: Sequence Tag Alignment and Consensus Knowledgebase.

Authors:  A Christoffels; A van Gelder; G Greyling; R Miller; T Hide; W Hide
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The genexpress IMAGE knowledge base of the human muscle transcriptome: a resource of structural, functional, and positional candidate genes for muscle physiology and pathologies.

Authors:  G Piétu; E Eveno; B Soury-Segurens; N A Fayein; R Mariage-Samson; C Matingou; E Leroy; C Dechesne; S Krieger; W Ansorge; I Reguigne-Arnould; D Cox; A Dehejia; M H Polymeropoulos; M D Devignes; C Auffray
Journal:  Genome Res       Date:  1999-12       Impact factor: 9.043

3.  A two-step strategy for constructing specifically self-subtracted cDNA libraries.

Authors:  Paolo Laveder; Cristiano De Pittà; Stefano Toppo; Giorgio Valle; Gerolamo Lanfranchi
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

4.  Inventory of high-abundance mRNAs in skeletal muscle of normal men.

Authors:  S Welle; K Bhatt; C A Thornton
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

5.  Alternative gene form discovery and candidate gene selection from gene indexing projects.

Authors:  J Burke; H Wang; W Hide; D B Davison
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  A bacterial artificial chromosome-based framework contig map of human chromosome 22q.

Authors:  U J Kim; H Shizuya; H L Kang; S S Choi; C L Garrett; L J Smink; B W Birren; J R Korenberg; I Dunham; M I Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

7.  The Radiation Hybrid Database.

Authors:  P Rodriguez-Tomé; P Lijnzaad
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

8.  A comparison of expressed sequence tags (ESTs) to human genomic sequences.

Authors:  T G Wolfsberg; D Landsman
Journal:  Nucleic Acids Res       Date:  1997-04-15       Impact factor: 16.971

9.  d2_cluster: a validated method for clustering EST and full-length cDNAsequences.

Authors:  J Burke; D Davison; W Hide
Journal:  Genome Res       Date:  1999-11       Impact factor: 9.043

10.  Molecular cloning and functional expression of a novel human gene encoding two 41-43 kDa skeletal muscle internal membrane proteins.

Authors:  S Bouju; M F Lignon; G Piétu; M Le Cunff; J J Léger; C Auffray; C A Dechesne
Journal:  Biochem J       Date:  1998-11-01       Impact factor: 3.857

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