Literature DB >> 8580968

Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs.

R Cooke1, M Raynal, M Laudié, F Grellet, M Delseny, P C Morris, D Guerrier, J Giraudat, F Quigley, G Clabault, Y F Li, R Mache, M Krivitzky, I J Gy, M Kreis, A Lecharny, Y Parmentier, J Marbach, J Fleck, B Clément, G Philipps, C Hervé, C Bardet, D Tremousaygue, H Höfte.   

Abstract

Nearly 7000 Arabidopsis thaliana-expressed sequence tags (ESTs) from 10 cDNA libraries have been sequenced, of which almost 5000 non-redundant tags have been submitted to the EMBL data bank. The quality of the cDNA libraries used is analysed. Similarity searches in international protein data banks have allowed the detection of significant similarities to a wide range of proteins from many organisms. Alignment with ESTs from the rice systematic sequencing project has allowed the detection of amino acid motifs which are conserved between the two organisms, thus identifying tags to genes encoding highly conserved proteins. These genes are candidates for a common framework in genome mapping projects in different plants.

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Year:  1996        PMID: 8580968     DOI: 10.1046/j.1365-313x.1996.09010101.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  41 in total

1.  A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil.

Authors:  J A White; J Todd; T Newman; N Focks; T Girke; O M de Ilárduya; J G Jaworski; J B Ohlrogge; C Benning
Journal:  Plant Physiol       Date:  2000-12       Impact factor: 8.340

2.  Extensive duplication and reshuffling in the Arabidopsis genome.

Authors:  G Blanc; A Barakat; R Guyot; R Cooke; M Delseny
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

3.  Differential expression of potato U1A spliceosomal protein genes: a rapid method for expression profiling of multigene families.

Authors:  A F Ibrahim; J A Watters; J W Brown
Journal:  Plant Mol Biol       Date:  2001-03       Impact factor: 4.076

4.  The major intrinsic protein family of Arabidopsis has 23 members that form three distinct groups with functional aquaporins in each group.

Authors:  A Weig; C Deswarte; M J Chrispeels
Journal:  Plant Physiol       Date:  1997-08       Impact factor: 8.340

5.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Authors:  Brian J Haas; Arthur L Delcher; Stephen M Mount; Jennifer R Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen White
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

6.  Cuticular waxes of Arabidopsis.

Authors:  Matthew A Jenks; Sanford D Eigenbrode; Bertrand Lemieux
Journal:  Arabidopsis Book       Date:  2002-08-12

7.  RLK7, a leucine-rich repeat receptor-like kinase, is required for proper germination speed and tolerance to oxidative stress in Arabidopsis thaliana.

Authors:  Delphine Pitorre; Christel Llauro; Edouard Jobet; Jocelyne Guilleminot; Jean-Paul Brizard; Michel Delseny; Eric Lasserre
Journal:  Planta       Date:  2010-09-02       Impact factor: 4.116

8.  cDNA sequence, genomic organization and differential expression of three Arabidopsis genes for germin/oxalate oxidase-like proteins.

Authors:  N Membré; A Berna; G Neutelings; A David; H David; D Staiger; J Sáez Vásquez; M Raynal; M Delseny; F Bernier
Journal:  Plant Mol Biol       Date:  1997-11       Impact factor: 4.076

9.  A unigene catalogue of 5700 expressed genes in cassava.

Authors:  Camilo Lopez; Véronique Jorge; Benoît Piégu; Chickelu Mba; Diego Cortes; Silvia Restrepo; Mauricio Soto; Michèle Laudié; Christel Berger; Richard Cooke; Michel Delseny; Joe Tohme; Valérie Verdier
Journal:  Plant Mol Biol       Date:  2004-11       Impact factor: 4.076

10.  Cytosolic, mitochondrial thioredoxins and thioredoxin reductases in Arabidopsis thaliana.

Authors:  Claire Bréhélin; Christophe Laloi; Aaron T Setterdahl; David B Knaff; Yves Meyer
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

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