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Literature DB >> 8576965

The age of Alu subfamilies.

Abstract

Using Kimura's distance measure we have calculated the average age of all major Alu subfamilies based on the most recent available data. We conclude that AluJ sequences are some 26 Myr older than previously thought. Furthermore, the origin of the FLA (Free Left Arm) Alu family can be traced back to the very beginning of the mammalian radiation. One new minor subfamily is reported and discussed in the context of sequence diversity in major Alu subfamilies.

Entities: Species

Mesh：

Year: 1996 PMID： 8576965 DOI： 10.1007/bf00163212

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

33 in total

1. Structure and variability of recently inserted Alu family members.

Authors: M A Batzer; G E Kilroy; P E Richard; T H Shaikh; T D Desselle; C L Hoppens; P L Deininger
Journal: Nucleic Acids Res Date: 1990-12-11 Impact factor: 16.971

2. Recently amplified Alu family members share a common parental Alu sequence.

Authors: P L Deininger; V K Slagel
Journal: Mol Cell Biol Date: 1988-10 Impact factor: 4.272

3. Existence of at least three distinct Alu subfamilies.

Authors: C Willard; H T Nguyen; C W Schmid
Journal: J Mol Evol Date: 1987 Impact factor: 2.395

4. Clustering and subfamily relationships of the Alu family in the human genome.

Authors: V Slagel; E Flemington; V Traina-Dorge; H Bradshaw; P Deininger
Journal: Mol Biol Evol Date: 1987-01 Impact factor: 16.240

5. Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory.

Authors: T Ohta
Journal: J Mol Evol Date: 1995-01 Impact factor: 2.395

6. An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily.

Authors: G B Hutchinson; S E Andrew; H McDonald; Y P Goldberg; R Graham; J M Rommens; M R Hayden
Journal: Nucleic Acids Res Date: 1993-07-25 Impact factor: 16.971

7. A new subfamily of recently retroposed human Alu repeats.

Authors: J Jurka
Journal: Nucleic Acids Res Date: 1993-05-11 Impact factor: 16.971

8. A master sequence related to a free left Alu monomer (FLAM) at the origin of the B1 family in rodent genomes.

Authors: Y Quentin
Journal: Nucleic Acids Res Date: 1994-06-25 Impact factor: 16.971

9. Structure of the rat gene encoding the mitochondrial benzodiazepine receptor.

Authors: S O Casalotti; G Pelaia; A G Yakovlev; T Csikós; D R Grayson; K E Krueger
Journal: Gene Date: 1992-11-16 Impact factor: 3.688

10. BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element.

Authors: J A Martignetti; J Brosius
Journal: Proc Natl Acad Sci U S A Date: 1993-12-15 Impact factor: 11.205

100 in total

1. SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity.

Authors: S Gaudieri; R L Dawkins; K Habara; J K Kulski; T Gojobori
Journal: Genome Res Date: 2000-10 Impact factor: 9.043

The age of Alu subfamilies.

1. Structure and variability of recently inserted Alu family members.

2. Recently amplified Alu family members share a common parental Alu sequence.

3. Existence of at least three distinct Alu subfamilies.

4. Clustering and subfamily relationships of the Alu family in the human genome.

5. Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory.

6. An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily.

7. A new subfamily of recently retroposed human Alu repeats.

8. A master sequence related to a free left Alu monomer (FLAM) at the origin of the B1 family in rodent genomes.

9. Structure of the rat gene encoding the mitochondrial benzodiazepine receptor.

10. BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element.

1. SNP profile within the human major histocompatibility complex reveals an extreme and interrupted level of nucleotide diversity.

2. Alu-containing exons are alternatively spliced.

3. Complex evolution of 7E olfactory receptor genes in segmental duplications.

4. Duplication, coclustering, and selection of human Alu retrotransposons.

5. An Alu transposition model for the origin and expansion of human segmental duplications.

6. Evolutionary relationships of major histocompatibility complex class I genes in simian primates.

7. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.

8. Comparative analysis of Alu insertion sequences in the APP 5' flanking region in humans and other primates.

9. Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling.

10. AluGene: a database of Alu elements incorporated within protein-coding genes.