Literature DB >> 8574702

Freeze trapping of reaction intermediates.

K Moffat1, R Henderson.   

Abstract

Structural intermediates in a biological reaction may be monitored by rapid spectroscopic or somewhat slower structural techniques. Intermediates may evolve in real time (no trapping), be stabilized by chemical manipulation of the reactants, the macromolecule or the solvent (chemical trapping), or be stabilized by lowering the temperature (freeze trapping). The last is beginning to be coupled with X-ray diffraction, electron cryomicroscopy and solid-state NMR approaches to characterize the trapped intermediates. Care in conducting such experiments, together with an awareness of possible artefacts, is essential if reliable structural results are to be obtained.

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Year:  1995        PMID: 8574702     DOI: 10.1016/0959-440x(95)80059-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  Application of singular value decomposition to the analysis of time-resolved macromolecular x-ray data.

Authors:  Marius Schmidt; Sudarshan Rajagopal; Zhong Ren; Keith Moffat
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

2.  Protein kinetics: structures of intermediates and reaction mechanism from time-resolved x-ray data.

Authors:  Marius Schmidt; Reinhard Pahl; Vukica Srajer; Spencer Anderson; Zhong Ren; Hyotcherl Ihee; Sudarshan Rajagopal; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-23       Impact factor: 11.205

3.  Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.

Authors:  Xiaojing Yang; Zhong Ren; Jane Kuk; Keith Moffat
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

4.  Structural basis for the catalytic mechanism of human phosphodiesterase 9.

Authors:  Shenping Liu; Mahmoud N Mansour; Keith S Dillman; Jose R Perez; Dennis E Danley; Paul A Aeed; Samuel P Simons; Peter K Lemotte; Frank S Menniti
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-29       Impact factor: 11.205

5.  Cluster analysis of time-dependent crystallographic data: Direct identification of time-independent structural intermediates.

Authors:  Konstantin S Kostov; Keith Moffat
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

6.  Snapshot of a phosphorylated substrate intermediate by kinetic crystallography.

Authors:  H Käck; K J Gibson; Y Lindqvist; G Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-12       Impact factor: 11.205

7.  Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.

Authors:  Michael C Thompson; Duilio Cascio; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-24       Impact factor: 7.652

8.  Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies.

Authors:  Piotr Maj; Adam Jarmuła; Piotr Wilk; Małgorzata Prokopowicz; Wojciech Rypniewski; Zbigniew Zieliński; Anna Dowierciał; Agnieszka Bzowska; Wojciech Rode
Journal:  Int J Mol Sci       Date:  2021-04-30       Impact factor: 5.923

9.  Effects of cryo-EM cooling on structural ensembles.

Authors:  Lars V Bock; Helmut Grubmüller
Journal:  Nat Commun       Date:  2022-03-31       Impact factor: 14.919

Review 10.  Advances in methods for atomic resolution macromolecular structure determination.

Authors:  Michael C Thompson; Todd O Yeates; Jose A Rodriguez
Journal:  F1000Res       Date:  2020-07-02
  10 in total

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