Literature DB >> 8569500

How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics.

U Schmitz1, T L James.   

Abstract

Mesh:

Substances:

Year:  1995        PMID: 8569500     DOI: 10.1016/s0076-6879(95)61003-0

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


× No keyword cloud information.
  17 in total

1.  Restrained molecular dynamics of solvated duplex DNA using the particle mesh Ewald method.

Authors:  D E Konerding; T E Cheatham; P A Kollman; T L James
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

2.  NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.

Authors:  D A Klewer; A Hoskins; P Zhang; V J Davisson; D E Bergstrom; A C LiWang
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

3.  Measurement of 1H3'-31P dipolar couplings in a DNA oligonucleotide by constant-time NOESY difference spectroscopy.

Authors:  Z Wu; N Tjandra; A Bax
Journal:  J Biomol NMR       Date:  2001-04       Impact factor: 2.835

4.  Fine mapping of inherent flexibility variation along DNA molecules: validation by atomic force microscopy (AFM) in buffer.

Authors:  Monique Marilley; Albert Sanchez-Sevilla; José Rocca-Serra
Journal:  Mol Genet Genomics       Date:  2005-11-01       Impact factor: 3.291

5.  Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets.

Authors:  J L Asensio; T Brown; A N Lane
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

6.  NMR structure refinement and dynamics of the K+-[d(G3T4G3)]2 quadruplex via particle mesh Ewald molecular dynamics simulations.

Authors:  G D Strahan; M A Keniry; R H Shafer
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

7.  Sensitivity of NMR internucleotide distances to B-DNA conformation: underlying mechanics.

Authors:  A Lefebvre; S Fermandjian; B Hartmann
Journal:  Nucleic Acids Res       Date:  1997-10-01       Impact factor: 16.971

8.  Sugar conformation of a stereospecific 2'-R or 2'-S deuterium-labeled DNA decamer studied with proton-proton J coupling constants.

Authors:  C Kojima; E Kawashima; T Sekine; Y Ishido; A Ono; M Kainosho; Y Kyogoku
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

9.  Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints.

Authors:  J M Aramini; A Mujeeb; N B Ulyanov; M W Germann
Journal:  J Biomol NMR       Date:  2000-12       Impact factor: 2.835

10.  Structural perturbations induced by the alpha-anomer of the aflatoxin B(1) formamidopyrimidine adduct in duplex and single-strand DNA.

Authors:  Kyle L Brown; Markus W Voehler; Shane M Magee; Constance M Harris; Thomas M Harris; Michael P Stone
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.