Literature DB >> 8568858

Evolutionary dynamics of non-coding sequences within the class II region of the human MHC.

S Beck1, S Abdulla, R P Alderton, R J Glynne, I G Gut, L K Hosking, A Jackson, A Kelly, W R Newell, P Sanseau, E Radley, K L Thorpe, J Trowsdale.   

Abstract

About 40% (350 kb) of the human MHC class II region has been sequenced and a coordinated effort to sequence the entire MHC is underway. In addition to the coding information (22 genes/pseudogenes), the non-coding sequences reveal novel information on the organisation and evolution of the MHC as demonstrated here by the example of a 200 kb contig that has been analysed for local and global features. In conjunction with cross-species comparisons, our results present new evidence on the structure of isochores, the evolutionary dynamics of repeat-mediated recombination and its effect on certain MHC encoded genes, and a higher than average degree of natural polymorphism that has implications for sequencing the human genome. We also report the finding of a class I-related pseudogene (HLA-ZI) in the middle of the class II region, which provides the first direct evidence for DNA exchange between these two related regions in man.

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Year:  1996        PMID: 8568858     DOI: 10.1006/jmbi.1996.0001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Extensive polymorphism and different evolutionary patterns of intron 2 were identified in the HLA-DQB1 gene.

Authors:  Yonggui Fu; Zehuan Liu; Jianghai Lin; Weimin Chen; Zongjian Jia; Dejing Pan; Anlong Xu
Journal:  Immunogenetics       Date:  2003-01-15       Impact factor: 2.846

2.  Distribution of HERV-LTR elements in HLA-DQB1 alleles: comments on the article by Bieda et al.

Authors:  M Pascual; B P Koeleman; P Eerligh; B O Roep; J Martin
Journal:  Diabetologia       Date:  2003-06-11       Impact factor: 10.122

3.  The complete genomic sequence of 424,015 bp at the centromeric end of the HLA class I region: gene content and polymorphism.

Authors:  T Guillaudeux; M Janer; G K Wong; T Spies; D E Geraghty
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

4.  Divergent intron arrangement in the MB1/LMP7 proteasome gene pair.

Authors:  S Abdulla; S Beck; M Belich; A Jackson; T Nakamura; J Trowsdale
Journal:  Immunogenetics       Date:  1996       Impact factor: 2.846

5.  Phylogeny and structure of the RING3 gene.

Authors:  K L Thorpe; S Abdulla; J Kaufman; J Trowsdale; S Beck
Journal:  Immunogenetics       Date:  1996       Impact factor: 2.846

6.  Characterization of recombination in the HLA class II region.

Authors:  M Cullen; J Noble; H Erlich; K Thorpe; S Beck; W Klitz; J Trowsdale; M Carrington
Journal:  Am J Hum Genet       Date:  1997-02       Impact factor: 11.025

7.  Identification and characterization of a TAP-family gene in the lamprey.

Authors:  Tatiana S Uinuk-ool; Werner E Mayer; Akie Sato; Naoko Takezaki; Lesley Benyon; Max D Cooper; Jan Klein
Journal:  Immunogenetics       Date:  2003-03-29       Impact factor: 2.846

8.  Characterization of clustered MHC-linked olfactory receptor genes in human and mouse.

Authors:  R M Younger; C Amadou; G Bethel; A Ehlers; K F Lindahl; S Forbes; R Horton; S Milne; A J Mungall; J Trowsdale; A Volz; A Ziegler; S Beck
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

9.  The tammar wallaby major histocompatibility complex shows evidence of past genomic instability.

Authors:  Hannah V Siddle; Janine E Deakin; Penny Coggill; Laurens G Whilming; Jennifer Harrow; Jim Kaufman; Stephan Beck; Katherine Belov
Journal:  BMC Genomics       Date:  2011-08-19       Impact factor: 3.969

10.  Rescue of MHC-1 antigen processing machinery by down-regulation in expression of IGF-1 in human glioblastoma cells.

Authors:  Yuexin Pan; Jerzy Trojan; Yajun Guo; Donald D Anthony
Journal:  PLoS One       Date:  2013-03-20       Impact factor: 3.240

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