Literature DB >> 8563640

New protein functions in yeast chromosome VIII.

C Ouzounis1, P Bork, G Casari, C Sander.   

Abstract

The analysis of the 269 open reading frames of yeast chromosome VIII by computational methods has yielded 24 new significant sequence similarities to proteins of known function. The resulting predicted functions include three particularly interesting cases of translation-associated proteins: peptidyl-tRNA hydrolase, a ribosome recycling factor homologue, and a protein similar to cytochrome b translational activator CBS2. The methodological limits of the meaningful transfer of functional information between distant homologues are discussed.

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Year:  1995        PMID: 8563640      PMCID: PMC2143003          DOI: 10.1002/pro.5560041121

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  19 in total

1.  The complete DNA sequence of yeast chromosome III.

Authors:  S G Oliver; Q J van der Aart; M L Agostoni-Carbone; M Aigle; L Alberghina; D Alexandraki; G Antoine; R Anwar; J P Ballesta; P Benit
Journal:  Nature       Date:  1992-05-07       Impact factor: 49.962

2.  Yeast nuclear gene CBS2, required for translational activation of cytochrome b, encodes a basic protein of 45 kDa.

Authors:  U Michaelis; T Schlapp; G Rödel
Journal:  Mol Gen Genet       Date:  1988-10

Review 3.  Origin and evolution of organelle genomes.

Authors:  M W Gray
Journal:  Curr Opin Genet Dev       Date:  1993-12       Impact factor: 5.578

4.  Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae.

Authors:  P E Thorsness; T D Fox
Journal:  Nature       Date:  1990-07-26       Impact factor: 49.962

5.  Identification of CBS2 as a mitochondrial protein in Saccharomyces cerevisiae.

Authors:  U Michaelis; G Rödel
Journal:  Mol Gen Genet       Date:  1990-09

6.  Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth.

Authors:  L Janosi; I Shimizu; A Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

7.  Complete DNA sequence of yeast chromosome XI.

Authors:  B Dujon; D Alexandraki; B André; W Ansorge; V Baladron; J P Ballesta; A Banrevi; P A Bolle; M Bolotin-Fukuhara; P Bossier; G Bou; J Boyer; M J Bultrago; G Cheret; L Colleaux; B Dalgnan-Fornler; F del Rey; C Dlon; H Domdey; A Düsterhoft; S Düsterhus; K D Entlan; H Erfle; P F Esteban; H Feldmann; L Fernandes; G M Robo; C Fritz; H Fukuhara; C Gabel; L Gaillon; J M Carcia-Cantalejo; J J Garcia-Ramirez; N E Gent; M Ghazvini; A Goffeau; A Gonzaléz; D Grothues; P Guerreiro; J Hegemann; N Hewitt; F Hilger; C P Hollenberg; O Horaitis; K J Indge; A Jacquier; C M James; C Jauniaux; A Jimenez; H Keuchel; L Kirchrath; K Kleine; P Kötter; P Legrain; S Liebl; E J Louis; A Maia e Silva; C Marck; A L Monnier; D Möstl; S Müller; B Obermaier; S G Oliver; C Pallier; S Pascolo; F Pfeiffer; P Philippsen; R J Planta; F M Pohl; T M Pohl; R Pöhlmann; D Portetelle; B Purnelle; V Puzos; M Ramezani Rad; S W Rasmussen; M Remacha; J L Revuelta; G F Richard; M Rieger; C Rodrigues-Pousada; M Rose; T Rupp; M A Santos; C Schwager; C Sensen; J Skala; H Soares; F Sor; J Stegemann; H Tettelin; A Thierry; M Tzermia; L A Urrestarazu; L van Dyck; J C Van Vliet-Reedijk; M Valens; M Vandenbo; C Vilela; S Vissers; D von Wettstein; H Voss; S Wiemann; G Xu; J Zimmermann; M Haasemann; I Becker; H W Mewes
Journal:  Nature       Date:  1994-06-02       Impact factor: 49.962

8.  Role of the 1-72 base pair in tRNAs for the activity of Escherichia coli peptidyl-tRNA hydrolase.

Authors:  S Dutka; T Meinnel; C Lazennec; Y Mechulam; S Blanquet
Journal:  Nucleic Acids Res       Date:  1993-08-25       Impact factor: 16.971

9.  Peptidyl-tRNA hydrolase is involved in lambda inhibition of host protein synthesis.

Authors:  M R García-Villegas; F M De La Vega; J M Galindo; M Segura; R H Buckingham; G Guarneros
Journal:  EMBO J       Date:  1991-11       Impact factor: 11.598

10.  Yeast chromosome III: new gene functions.

Authors:  E V Koonin; P Bork; C Sander
Journal:  EMBO J       Date:  1994-02-01       Impact factor: 11.598

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  6 in total

1.  Ribosomal release without peptidyl tRNA hydrolysis at translation termination in a eukaryotic system.

Authors:  J Cao; A P Geballe
Journal:  RNA       Date:  1998-02       Impact factor: 4.942

2.  Reverse transcriptase-polymerase chain reaction validation of 25 "orphan" genes from Escherichia coli K-12 MG1655.

Authors:  J P Alimi; O Poirot; F Lopez; J M Claverie
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

Review 3.  The past, present and future of genome-wide re-annotation.

Authors:  Christos A Ouzounis; Peter D Karp
Journal:  Genome Biol       Date:  2002-01-31       Impact factor: 13.583

4.  Molecular cloning, sequencing, purification, and characterization of Pseudomonas aeruginosa ribosome recycling factor.

Authors:  M Ohnishi; L Janosi; M Shuda; H Matsumoto; T Hayashi; Y Terawaki; A Kaji
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

Review 5.  Posttranscriptional control of gene expression in yeast.

Authors:  J E McCarthy
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

6.  Solving the Problem: Genome Annotation Standards before the Data Deluge.

Authors:  William Klimke; Claire O'Donovan; Owen White; J Rodney Brister; Karen Clark; Boris Fedorov; Ilene Mizrachi; Kim D Pruitt; Tatiana Tatusova
Journal:  Stand Genomic Sci       Date:  2011-10-01
  6 in total

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