Literature DB >> 8557053

mRNA retroposition in human cells: processed pseudogene formation.

J Maestre1, T Tchénio, O Dhellin, T Heidmann.   

Abstract

Using a sensitive assay for detection of reverse transcription events, we demonstrate that human HeLa cells can 'retropose', i.e. reverse transcribe and integrate, the mRNA of a naive reporter gene, at a low but detectable frequency. Furthermore, we show that the retroposed copies have all the hallmarks of the processed pseudogenes naturally found in the mammalian genome: they lack intron and 5' promoter sequence, they have acquired a 3' poly(A) tail, and they are flanked by short repeats (< 15 bp) of target DNA sequence. These results demonstrate that human cells possess an endogenous reverse transcription activity, which is not restricted to transcripts of transposable elements, and which is likely to be involved in the formation, still ongoing, of a large fraction of the eukaryotic genome.

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Year:  1995        PMID: 8557053      PMCID: PMC394758          DOI: 10.1002/j.1460-2075.1995.tb00324.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  31 in total

1.  Evidence for retrotransposition of the I factor, a LINE element of Drosophila melanogaster.

Authors:  A Pélisson; D J Finnegan; A Bucheton
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-01       Impact factor: 11.205

Review 2.  The origin and evolution of retroposons.

Authors:  J H Rogers
Journal:  Int Rev Cytol       Date:  1985

3.  Unusual features of integrated cDNAs generated by infection with genome-free retroviruses.

Authors:  K L Levine; B Steiner; K Johnson; R Aronoff; T J Quinton; M L Linial
Journal:  Mol Cell Biol       Date:  1990-05       Impact factor: 4.272

4.  RNA-dependent DNA polymerase in virions of RNA tumour viruses.

Authors:  D Baltimore
Journal:  Nature       Date:  1970-06-27       Impact factor: 49.962

5.  RNA-dependent DNA polymerase in virions of Rous sarcoma virus.

Authors:  H M Temin; S Mizutani
Journal:  Nature       Date:  1970-06-27       Impact factor: 49.962

Review 6.  The intracisternal A-particle gene family: structure and functional aspects.

Authors:  E L Kuff; K K Lueders
Journal:  Adv Cancer Res       Date:  1988       Impact factor: 6.242

7.  An indicator gene to demonstrate intracellular transposition of defective retroviruses.

Authors:  T Heidmann; O Heidmann; J F Nicolas
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

8.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

9.  Insertion of a 5' truncated L1 element into the 3' end of exon 44 of the dystrophin gene resulted in skipping of the exon during splicing in a case of Duchenne muscular dystrophy.

Authors:  N Narita; H Nishio; Y Kitoh; Y Ishikawa; Y Ishikawa; R Minami; H Nakamura; M Matsuo
Journal:  J Clin Invest       Date:  1993-05       Impact factor: 14.808

10.  An indicator gene for detection of germline retrotransposition in transgenic Drosophila demonstrates RNA-mediated transposition of the LINE I element.

Authors:  S Jensen; T Heidmann
Journal:  EMBO J       Date:  1991-07       Impact factor: 11.598

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  54 in total

1.  Determination of L1 retrotransposition kinetics in cultured cells.

Authors:  E M Ostertag; E T Prak; R J DeBerardinis; J V Moran; H H Kazazian
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes.

Authors:  M Speek
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

3.  Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution.

Authors:  Adam Pavlícek; Jan Paces; Daniel Elleder; Jirí Hejnar
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

4.  Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul M Harrison; Yin Liu; Mark Gerstein
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

5.  Retroposed copies of the HMG genes: a window to genome dynamics.

Authors:  Liora Z Strichman-Almashanu; Michael Bustin; David Landsman
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

6.  A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.

Authors:  Joseph C Kuhl; Foo Cheung; Qiaoping Yuan; William Martin; Yayeh Zewdie; John McCallum; Andrew Catanach; Paul Rutherford; Kenneth C Sink; Maria Jenderek; James P Prince; Christopher D Town; Michael J Havey
Journal:  Plant Cell       Date:  2003-12-11       Impact factor: 11.277

7.  A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene.

Authors:  Yoshihisa Yano; Rintaro Saito; Noriyuki Yoshida; Atsushi Yoshiki; Anthony Wynshaw-Boris; Masaru Tomita; Shinji Hirotsune
Journal:  J Mol Med (Berl)       Date:  2004-05-18       Impact factor: 4.599

8.  Pseudogene: lessons from PCR bias, identification and resurrection.

Authors:  Shan-Min Chen; Ka-Yan Ma; Jin Zeng
Journal:  Mol Biol Rep       Date:  2010-11-30       Impact factor: 2.316

9.  A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex.

Authors:  Masafumi Nozawa; Tadashi Aotsuka; Koichiro Tamura
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

10.  Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes.

Authors:  Toshiaki Watanabe; Atsushi Takeda; Tomoyuki Tsukiyama; Kazuyuki Mise; Tetsuro Okuno; Hiroyuki Sasaki; Naojiro Minami; Hiroshi Imai
Journal:  Genes Dev       Date:  2006-06-09       Impact factor: 11.361

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