Literature DB >> 8534794

Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane.

S W Chiu1, M Clark, V Balaji, S Subramaniam, H L Scott, E Jakobsson.   

Abstract

In this paper we report on the molecular dynamics simulation of a fluid phase hydrated dimyristoylphosphatidylcholine bilayer. The initial configuration of the lipid was the x-ray crystal structure. A distinctive feature of this simulation is that, upon heating the system, the fluid phase emerged from parameters, initial conditions, and boundary conditions determined independently of the collective properties of the fluid phase. The initial conditions did not include chain disorder characteristic of the fluid phase. The partial charges on the lipids were determined by ab initio self-consistent field calculations and required no adjustment to produce a fluid phase. The boundary conditions were constant pressure and temperature. Thus the membrane was not explicitly required to assume an area/phospholipid molecule thought to be characteristic of the fluid phase, as is the case in constant volume simulations. Normal to the membrane plane, the pressure was 1 atmosphere, corresponding to the normal laboratory situation. Parallel to the membrane plane a negative pressure of -100 atmospheres was applied, derived from the measured surface tension of a monolayer at an air-water interface. The measured features of the computed membrane are generally in close agreement with experiment. Our results confirm the concept that, for appropriately matched temperature and surface pressure, a monolayer is a close approximation to one-half of a bilayer. Our results suggest that the surface area per phospholipid molecule for fluid phosphatidylcholine bilayer membranes is smaller than has generally been assumed in computational studies at constant volume. Our results confirm that the basis of the measured dipole potential is primarily water orientations and also suggest the presence of potential barriers for the movement of positive charges across the water-headgroup interfacial region of the phospholipid.

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Year:  1995        PMID: 8534794      PMCID: PMC1236354          DOI: 10.1016/S0006-3495(95)80005-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

Review 1.  Hydration and steric pressures between phospholipid bilayers.

Authors:  T J McIntosh; S A Simon
Journal:  Annu Rev Biophys Biomol Struct       Date:  1994

2.  Deuterium nuclear magnetic resonance studies of the interaction between dimyristoylphosphatidylcholine and gramicidin A'.

Authors:  D Rice; E Oldfield
Journal:  Biochemistry       Date:  1979-07-24       Impact factor: 3.162

3.  Spectroscopic studies of specifically deuterium labeled membrane systems. Nuclear magnetic resonance investigation of the effects of cholesterol in model systems.

Authors:  E Oldfield; M Meadows; D Rice; R Jacobs
Journal:  Biochemistry       Date:  1978-07-11       Impact factor: 3.162

Review 4.  Physical principles of membrane organization.

Authors:  J N Israelachvili; S Marcelja; R G Horn
Journal:  Q Rev Biophys       Date:  1980-05       Impact factor: 5.318

Review 5.  Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine.

Authors:  H Hauser; I Pascher; R H Pearson; S Sundell
Journal:  Biochim Biophys Acta       Date:  1981-06-16

6.  Small phospholipid vesicles: internal pressure, surface tension, and surface free energy.

Authors:  S H White
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

7.  Lipid conformation in model membranes and biological membranes.

Authors:  J Seelig; A Seelig
Journal:  Q Rev Biophys       Date:  1980-02       Impact factor: 5.318

8.  Temperature and compositional dependence of the structure of hydrated dimyristoyl lecithin.

Authors:  M J Janiak; D M Small; G G Shipley
Journal:  J Biol Chem       Date:  1979-07-10       Impact factor: 5.157

9.  Molecular dynamics simulations of phospholipid bilayers.

Authors:  P Huang; J J Perez; G H Loew
Journal:  J Biomol Struct Dyn       Date:  1994-04

10.  Experimental tests for protrusion and undulation pressures in phospholipid bilayers.

Authors:  T J McIntosh; S Advani; R E Burton; D V Zhelev; D Needham; S A Simon
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

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  109 in total

1.  Structural determinants of MscL gating studied by molecular dynamics simulations.

Authors:  J Gullingsrud; D Kosztin; K Schulten
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

2.  Effect of pH on the interfacial tension of lipid bilayer membrane.

Authors:  A D Petelska; Z A Figaszewski
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

3.  Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. II. Rates and mechanisms of water transport.

Authors:  S W Chiu; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

4.  Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration.

Authors:  R J Mashl; H L Scott; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

5.  Gramicidin A channel as a test ground for molecular dynamics force fields.

Authors:  Toby W Allen; Turgut Baştuğ; Serdar Kuyucak; Shin-Ho Chung
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

6.  Membrane protein dynamics in different environments: simulation study of the outer membrane protein X in a lipid bilayer and in a micelle.

Authors:  Alexandra Choutko; Alice Glättli; César Fernández; Christian Hilty; Kurt Wüthrich; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2010-10-05       Impact factor: 1.733

7.  Membrane peptides and their role in protobiological evolution.

Authors:  Andrew Pohorille; Michael A Wilson; Christophe Chipot
Journal:  Orig Life Evol Biosph       Date:  2003-04       Impact factor: 1.950

8.  A theoretical model for calculating voltage sensitivity of ion channels and the application on Kv1.2 potassium channel.

Authors:  Huaiyu Yang; Zhaobing Gao; Ping Li; Kunqian Yu; Ye Yu; Tian-Le Xu; Min Li; Hualiang Jiang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

9.  Geometrical properties of gel and fluid clusters in DMPC/DSPC bilayers: Monte Carlo simulation approach using a two-state model.

Authors:  I P Sugár; E Michonova-Alexova; P L Chong
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

10.  Free-energy profiles for ions in the influenza M2-TMD channel.

Authors:  Morad Mustafa; Douglas J Henderson; David D Busath
Journal:  Proteins       Date:  2009-09
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