Literature DB >> 8530569

Detection of DNA and RNA plant viruses by PCR and RT-PCR using a rapid virus release protocol without tissue homogenization.

D Thomson1, R G Dietzgen.   

Abstract

A simple, single-step plant tissue preparation protocol suitable for the detection of viruses by the polymerase chain reaction and reverse transcription-polymerase chain reaction is described. The effect of buffer components and pH, and the incubation temperature for the release of virus from plant material was evaluated. A small amount of plant tissue was heated in a solution containing 100 mM Tris-HCl, pH 7.4 or 8.4, 1 M KCl and 10 mM EDTA for 10 min at 95 degrees C and the supernatant used for enzymatic amplification. This protocol was suitable for the detection of both DNA and RNA viruses in a variety of plant species and tissues and reduced plant inhibitory factors which may interfere with PCR. The application of this method was demonstrated for the detection of banana bunchy top virus in banana leaves, root and corn, zucchini yellow mosaic potyvirus in squash leaves and lettuce necrotic yellows rhabdovirus in lettuce and Nicotiana glutinosa leaves.

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Year:  1995        PMID: 8530569     DOI: 10.1016/0166-0934(95)00022-m

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  4 in total

1.  A promoter from sugarcane bacilliform badnavirus drives transgene expression in banana and other monocot and dicot plants.

Authors:  P M Schenk; L Sagi; T Remans; R G Dietzgen; M J Bernard; M W Graham; J M Manners
Journal:  Plant Mol Biol       Date:  1999-04       Impact factor: 4.076

2.  Detection of tomato yellow leaf curl Thailand virus by PCR without DNA extraction.

Authors:  Supaporn Ieamkhang; Lumpueng Riangwong; Orawan Chatchawankanphanich
Journal:  Mol Biotechnol       Date:  2005-11       Impact factor: 2.695

3.  Chromogenic detection of yam mosaic virus by closed-tube reverse transcription loop-mediated isothermal amplification (CT-RT-LAMP).

Authors:  Chukwuemeka K Nkere; Joshua O Oyekanmi; Gonçalo Silva; Moritz Bömer; Gabriel I Atiri; Joseph Onyeka; Norbert G Maroya; Susan E Seal; P Lava Kumar
Journal:  Arch Virol       Date:  2018-01-08       Impact factor: 2.574

4.  One-Enzyme RTX-PCR for the Detection of RNA Viruses from Multiple Virus Genera and Crop Plants.

Authors:  Hana Hoffmeisterová; Kateřina Kratochvílová; Noemi Čeřovská; Lucie Slavíková; Jakub Dušek; Karel Muller; Jan Fousek; Helena Plchová; Oldřich Navrátil; Jiban Kumar Kundu; Tomáš Moravec
Journal:  Viruses       Date:  2022-01-31       Impact factor: 5.048

  4 in total

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