Literature DB >> 8529838

Mechanisms of phosphoryl and acyl transfer.

W W Cleland1, A C Hengge.   

Abstract

Acyl and phosphoryl transfer are important biochemical reactions. We have been using isotope effects caused by O-18, N-15, C-13, and deuterium substitution to examine the mechanisms and transition-state structures for enzymatic and nonenzymatic transfers of phosphoryl and acyl groups. Phosphoryl transfers from phosphate monoesters are highly dissociative, although not truly stepwise in protic solvents or in enzymatic reactions. Phosphodiesters show ANDN (SN2) reactions, whereas triester hydrolyses involve more associative transition states. Except under acidic conditions, true phosphorane intermediates likely form only when geometry requires (i.e., when the leaving group cannot be axial until pseudorotation of the phosphorane). Enzymatic phosphoryl transfers appear similar to nonenzymatic ones. The reactions of oxygen or sulfur nucleophiles with p-nitrophenyl acetate are concerted with a tetrahedral transition state, which is more dissociative with sulfur than with oxygen. Enzymatic hydrolyses of p-nitrophenyl acetate are also concerted reactions.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 8529838     DOI: 10.1096/fasebj.9.15.8529838

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  19 in total

1.  Toward a quantum-mechanical description of metal-assisted phosphoryl transfer in pyrophosphatase.

Authors:  P Heikinheimo; V Tuominen; A K Ahonen; A Teplyakov; B S Cooperman; A A Baykov; R Lahti; A Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

Review 2.  Biological phosphoryl-transfer reactions: understanding mechanism and catalysis.

Authors:  Jonathan K Lassila; Jesse G Zalatan; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

3.  Pentavalent Organo-Vanadates as Transition State Analogues for Phosphoryl Transfer Reactions.

Authors:  June M Messmore; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2000-10-18       Impact factor: 15.419

Review 4.  Kinetic isotope effects in the characterization of catalysis by protein tyrosine phosphatases.

Authors:  Alvan C Hengge
Journal:  Biochim Biophys Acta       Date:  2015-04-01

5.  Determination of hepatitis delta virus ribozyme N(-1) nucleobase and functional group specificity using internal competition kinetics.

Authors:  Daniel L Kellerman; Kandice S Simmons; Mayra Pedraza; Joseph A Piccirilli; Darrin M York; Michael E Harris
Journal:  Anal Biochem       Date:  2015-05-01       Impact factor: 3.365

6.  The intrinsic reactivity of ATP and the catalytic proficiencies of kinases acting on glucose, N-acetylgalactosamine, and homoserine: a thermodynamic analysis.

Authors:  Randy B Stockbridge; Richard Wolfenden
Journal:  J Biol Chem       Date:  2009-06-15       Impact factor: 5.157

7.  Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination.

Authors:  Rosalynn C Molden; Jonathan Goya; Zia Khan; Benjamin A Garcia
Journal:  Mol Cell Proteomics       Date:  2014-02-16       Impact factor: 5.911

Review 8.  Heavy atom labeled nucleotides for measurement of kinetic isotope effects.

Authors:  Benjamin P Weissman; Nan-Sheng Li; Darrin York; Michael Harris; Joseph A Piccirilli
Journal:  Biochim Biophys Acta       Date:  2015-03-27

9.  Computational delineation of tyrosyl-substrate recognition and catalytic landscapes by the epidermal growth factor receptor tyrosine kinase domain.

Authors:  Yingting Liu; Ravi Radhakrishnan
Journal:  Mol Biosyst       Date:  2014-04-29

Review 10.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.