Literature DB >> 8527676

Pentagon packing models for "all-pentamer" virus structures.

T Tarnai1, Z Gáspár, L Szalai.   

Abstract

A connection is made between 1) the observed structures of virus capsids whose capsomers are all pentamers and 2) the mathematical problem of determination of the largest size of a given number of equal regular spherical pentagons that can be packed on the surface of the unit sphere without overlapping. It is found that papillomaviruses provide the conjectured solution to the spherical pentagon packing problem for 72 pentagons. Thus, a study of some virus structures has given additional insight into a mathematical problem. At the same time this mathematical problem enables prediction of an octahedral form of papillomavirus particles consisting of 24 pentamers. It is also found that the various tubular and spherical "all-pentamer" virus structures identified so far can be represented by closet-packing arrangements of equal morphological units composed of equal regular pentagons on a cylinder and on a sphere.

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Year:  1995        PMID: 8527676      PMCID: PMC1236287          DOI: 10.1016/S0006-3495(95)79938-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  Polymorphism in the assembly of polyomavirus capsid protein VP1.

Authors:  D M Salunke; D L Caspar; R L Garcea
Journal:  Biophys J       Date:  1989-11       Impact factor: 4.033

2.  Physical principles in the construction of regular viruses.

Authors:  D L CASPAR; A KLUG
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1962

3.  Structure of simian virus 40 at 3.8-A resolution.

Authors:  R C Liddington; Y Yan; J Moulai; R Sahli; T L Benjamin; S C Harrison
Journal:  Nature       Date:  1991-11-28       Impact factor: 49.962

4.  The structure of viruses of the papilloma-polyoma type. V. Tubular variants built of pentamers.

Authors:  N A Kiselev; A Klug
Journal:  J Mol Biol       Date:  1969-03-14       Impact factor: 5.469

5.  Computer image modeling of pentamer packing in polyoma virus "hexamer" tubes.

Authors:  T S Baker; D L Caspar
Journal:  Ultramicroscopy       Date:  1984       Impact factor: 2.689

6.  Polyoma virus capsid structure at 22.5 A resolution.

Authors:  I Rayment; T S Baker; D L Caspar; W T Murakami
Journal:  Nature       Date:  1982-01-14       Impact factor: 49.962

7.  Architectural design of spherical viruses.

Authors:  A Klug
Journal:  Nature       Date:  1983 Jun 2-8       Impact factor: 49.962

8.  Viruses and a mathematical problem.

Authors:  M Goldberg
Journal:  J Mol Biol       Date:  1967-03-14       Impact factor: 5.469

9.  The capsid of small papova viruses contains 72 pentameric capsomeres: direct evidence from cryo-electron-microscopy of simian virus 40.

Authors:  T S Baker; J Drak; M Bina
Journal:  Biophys J       Date:  1989-02       Impact factor: 4.033

10.  Polyoma virus 'hexamer' tubes consist of paired pentamers.

Authors:  T S Baker; D L Caspar; W T Murakami
Journal:  Nature       Date:  1983 Jun 2-8       Impact factor: 49.962

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  4 in total

1.  Conserved features in papillomavirus and polyomavirus capsids.

Authors:  D M Belnap; N H Olson; N M Cladel; W W Newcomb; J C Brown; J W Kreider; N D Christensen; T S Baker
Journal:  J Mol Biol       Date:  1996-06-07       Impact factor: 5.469

2.  Stochastic kinetics of viral capsid assembly based on detailed protein structures.

Authors:  Martin Hemberg; Sophia N Yaliraki; Mauricio Barahona
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

3.  Local rules simulation of the kinetics of virus capsid self-assembly.

Authors:  R Schwartz; P W Shor; P E Prevelige; B Berger
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

4.  Assembly and Stability of Simian Virus 40 Polymorphs.

Authors:  Curt Waltmann; Roi Asor; Uri Raviv; Monica Olvera de la Cruz
Journal:  ACS Nano       Date:  2020-04-02       Impact factor: 15.881

  4 in total

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