Literature DB >> 8504106

Aspartic acid-212 of bacteriorhodopsin is ionized in the M and N photocycle intermediates: an FTIR study on specifically 13C-labeled reconstituted purple membranes.

K Fahmy1, O Weidlich, M Engelhard, H Sigrist, F Siebert.   

Abstract

Purple membrane was regenerated from the denatured proteolytic (protease V8) fragments V-1 and V-2 of bacteriorhodopsin (BR), native membrane lipids, and all-trans-retinal. FTIR difference spectra of M and N intermediates of the reconstituted system are in close correspondence to those obtained from native BR. Asp-212 is the only internal aspartic acid in the V-2 fragment (helices F and G). Reconstituting a V-2 fragment from a [4-13C]Asp-labeled BR preparation with an unmodified V-1 fragment and vice versa have allowed us to assign IR bands to either Asp-212 or any of the remaining aspartic acids on V-1 (helices A-E). A carboxylate vibration at 1392 cm-1 has been identified in the M and N intermediates and assigned to Asp-212. Since no contribution of this residue to C = O stretches of protonated carboxyl groups was detected, Asp-212 must be ionized in light-adapted BR as well. The effect of [4-13C]Asp labeling of V-1 revealed a carboxylate vibration at 1385 cm-1 in light-adapted BR. Since Asp-96 and Asp-115 are protonated, this band is caused by Asp-85. All absorption changes of C = O stretches of protonated carboxyl groups are due to Asp residues on V-1. Correspondingly, the proton acceptor for Schiff base deprotonation in M is located on V-1, and must be Asp-85 (the only ionized Asp on V-1). The band assignments are compared with those reported for BR mutants, and the potential role of Asp-212 for proton translocation is discussed.

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Year:  1993        PMID: 8504106     DOI: 10.1021/bi00073a020

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  In situ determination of transient pKa changes of internal amino acids of bacteriorhodopsin by using time-resolved attenuated total reflection Fourier-transform infrared spectroscopy.

Authors:  C Zscherp; R Schlesinger; J Tittor; D Oesterhelt; J Heberle
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

2.  FT-IR spectroscopic studies of the S state transitions.

Authors:  B A Barry
Journal:  Photosynth Res       Date:  2000       Impact factor: 3.573

3.  Proton transfers in a channelrhodopsin-1 studied by Fourier transform infrared (FTIR) difference spectroscopy and site-directed mutagenesis.

Authors:  John I Ogren; Adrian Yi; Sergey Mamaev; Hai Li; John L Spudich; Kenneth J Rothschild
Journal:  J Biol Chem       Date:  2015-03-23       Impact factor: 5.157

4.  Catalysis of the retinal subpicosecond photoisomerization process in acid purple bacteriorhodopsin and some bacteriorhodopsin mutants by chloride ions.

Authors:  S L Logunov; M A el-Sayed; J K Lanyi
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

5.  A model-independent approach to assigning bacteriorhodopsin's intramolecular reactions to photocycle intermediates.

Authors:  B Hessling; G Souvignier; K Gerwert
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

6.  Isotope-Labeled Aspartate Sidechain as a Non-Perturbing Infrared Probe: Application to Investigate the Dynamics of a Carboxylate Buried Inside a Protein.

Authors:  Rachel M Abaskharon; Stephen P Brown; Wenkai Zhang; Jianxin Chen; Amos B Smith; Feng Gai
Journal:  Chem Phys Lett       Date:  2017-03-23       Impact factor: 2.328

7.  Redox-linked conformational control of proton-coupled electron transfer: Y122 in the ribonucleotide reductase β2 subunit.

Authors:  Adam R Offenbacher; Lori A Burns; C David Sherrill; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2013-07-03       Impact factor: 2.991

Review 8.  Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.

Authors:  M R Gunner; Junjun Mao; Yifan Song; Jinrang Kim
Journal:  Biochim Biophys Acta       Date:  2006-06-17

9.  Comparison of the structural changes occurring during the primary phototransition of two different channelrhodopsins from Chlamydomonas algae.

Authors:  John I Ogren; Adrian Yi; Sergey Mamaev; Hai Li; Johan Lugtenburg; Willem J DeGrip; John L Spudich; Kenneth J Rothschild
Journal:  Biochemistry       Date:  2014-12-18       Impact factor: 3.162

  9 in total

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