Literature DB >> 8494970

Lateral diffusion in an archipelago. Dependence on tracer size.

M J Saxton1.   

Abstract

In a pure fluid-phase lipid, the dependence of the lateral diffusion coefficient on the size of the diffusing particle may be obtained from the Saffman-Delbrück equation or the free-volume model. When diffusion is obstructed by immobile proteins or domains of gel-phase lipids, the obstacles yield an additional contribution to the size dependence. Here this contribution is examined using Monte Carlo calculations. For random point and hexagonal obstacles, the diffusion coefficient depends strongly on the size of the diffusing particle, but for fractal obstacles--cluster-cluster aggregates and multicenter diffusion-limited aggregates--the diffusion coefficient is independent of the size of the diffusing particle. The reason is that fractals have no characteristic length scale, so a tracer sees on average the same obstructions, regardless of its size. The fractal geometry of the excluded area for tracers of various sizes is examined. Percolation thresholds are evaluated for a variety of obstacles to determine how the threshold depends on tracer size and to compare the thresholds for compact and extended obstacles.

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Year:  1993        PMID: 8494970      PMCID: PMC1262423          DOI: 10.1016/S0006-3495(93)81471-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Lateral diffusion and percolation in two-phase, two-component lipid bilayers. Topology of the solid-phase domains in-plane and across the lipid bilayer.

Authors:  P F Almeida; W L Vaz; T E Thompson
Journal:  Biochemistry       Date:  1992-08-11       Impact factor: 3.162

2.  Fluid phase connectivity in an isomorphous, two-component, two-phase phosphatidylcholine bilayer.

Authors:  W L Vaz; E C Melo; T E Thompson
Journal:  Biophys J       Date:  1990-07       Impact factor: 4.033

3.  Stratified continuum percolation: Scaling geometry of hierarchical cascades.

Authors: 
Journal:  Phys Rev A       Date:  1991-11-15       Impact factor: 3.140

4.  Percolation properties of random ellipses.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-01

5.  Lateral diffusion of membrane proteins in protein-rich membranes. A simple hard particle model for concentration dependence of the two-dimensional diffusion coefficient.

Authors:  A P Minton
Journal:  Biophys J       Date:  1989-04       Impact factor: 4.033

6.  Translational diffusion and fluid domain connectivity in a two-component, two-phase phospholipid bilayer.

Authors:  W L Vaz; E C Melo; T E Thompson
Journal:  Biophys J       Date:  1989-11       Impact factor: 4.033

7.  Lateral diffusion of lipids in complex biological membranes.

Authors:  T J O'Leary
Journal:  Proc Natl Acad Sci U S A       Date:  1987-01       Impact factor: 11.205

8.  Lateral diffusion in an archipelago. The effect of mobile obstacles.

Authors:  M J Saxton
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

9.  A milling crowd model for local and long-range obstructed lateral diffusion. Mobility of excimeric probes in the membrane of intact erythrocytes.

Authors:  J Eisinger; J Flores; W P Petersen
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

10.  Micrometer-scale domains in fibroblast plasma membranes.

Authors:  E Yechiel; M Edidin
Journal:  J Cell Biol       Date:  1987-08       Impact factor: 10.539

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  31 in total

1.  Real-time imaging of the dynamics of secretory granules in growth cones.

Authors:  J R Abney; C D Meliza; B Cutler; M Kingma; J E Lochner; B A Scalettar
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

2.  Translational diffusion of globular proteins in the cytoplasm of cultured muscle cells.

Authors:  M Arrio-Dupont; G Foucault; M Vacher; P F Devaux; S Cribier
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

3.  Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells.

Authors:  Matthias Weiss; Markus Elsner; Fredrik Kartberg; Tommy Nilsson
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

4.  Two-dimensional continuum percolation threshold for diffusing particles of nonzero radius.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

5.  The influence of protein-protein interactions on the organization of proteins within thylakoid membranes.

Authors:  I G Tremmel; E Weis; G D Farquhar
Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

6.  Diffusion in two-component lipid membranes--a fluorescence correlation spectroscopy and monte carlo simulation study.

Authors:  Agnieszka E Hac; Heiko M Seeger; Matthias Fidorra; Thomas Heimburg
Journal:  Biophys J       Date:  2004-10-22       Impact factor: 4.033

7.  Membrane lateral mobility obstructed by polymer-tethered lipids studied at the single molecule level.

Authors:  M A Deverall; E Gindl; E-K Sinner; H Besir; J Ruehe; M J Saxton; C A Naumann
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

8.  A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

9.  Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin.

Authors:  Aurélien Bancaud; Sébastien Huet; Nathalie Daigle; Julien Mozziconacci; Joël Beaudouin; Jan Ellenberg
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

10.  Simulation of the gel-fluid transition in a membrane composed of lipids with two connected acyl chains: application of a dimer-move step.

Authors:  R Jerala; P F Almeida; R L Biltonen
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

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