Literature DB >> 8468304

The Ada protein is a class I transcription factor of Escherichia coli.

K Sakumi1, K Igarashi, M Sekiguchi, A Ishihama.   

Abstract

The methylated Ada protein of Escherichia coli, a regulatory protein for the adaptive response, binds to a target DNA from positions -62 to -31 upstream of the ada gene and facilitates the binding of RNA polymerase to the promoter. Mutant RNA polymerases consisting of C-terminal-deleted alpha subunits are virtually inactive in response to activation by the Ada protein. Thus, we conclude that the Ada protein is a class I transcription factor which requires the C-terminal region of the RNA polymerase alpha subunit for transcription activation.

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Year:  1993        PMID: 8468304      PMCID: PMC204537          DOI: 10.1128/jb.175.8.2455-2457.1993

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  14 in total

1.  Bipartite functional map of the E. coli RNA polymerase alpha subunit: involvement of the C-terminal region in transcription activation by cAMP-CRP.

Authors:  K Igarashi; A Ishihama
Journal:  Cell       Date:  1991-06-14       Impact factor: 41.582

2.  Purification and structure of the intact Ada regulatory protein of Escherichia coli K12, O6-methylguanine-DNA methyltransferase.

Authors:  Y Nakabeppu; H Kondo; S Kawabata; S Iwanaga; M Sekiguchi
Journal:  J Biol Chem       Date:  1985-06-25       Impact factor: 5.157

Review 3.  Inducible DNA repair systems.

Authors:  G C Walker
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

4.  Expression of the ada gene of Escherichia coli in response to alkylating agents. Identification of transcriptional regulatory elements.

Authors:  T Nakamura; Y Tokumoto; K Sakumi; G Koike; Y Nakabeppu; M Sekiguchi
Journal:  J Mol Biol       Date:  1988-08-05       Impact factor: 5.469

5.  Role of the sigma 70 subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli.

Authors:  K Makino; M Amemura; S K Kim; A Nakata; H Shinagawa
Journal:  Genes Dev       Date:  1993-01       Impact factor: 11.361

6.  Functional sites of the Ada regulatory protein of Escherichia coli. Analysis by amino acid substitutions.

Authors:  K Takano; Y Nakabeppu; M Sekiguchi
Journal:  J Mol Biol       Date:  1988-05-20       Impact factor: 5.469

7.  Positive and negative regulation of transcription by a cleavage product of Ada protein.

Authors:  H Akimaru; K Sakumi; T Yoshikai; M Anai; M Sekiguchi
Journal:  J Mol Biol       Date:  1990-11-20       Impact factor: 5.469

8.  Cloning of the E. coli O6-methylguanine and methylphosphotriester methyltransferase gene using a functional DNA repair assay.

Authors:  G P Margison; D P Cooper; J Brennand
Journal:  Nucleic Acids Res       Date:  1985-03-25       Impact factor: 16.971

9.  Molecular cloning of a gene which regulates the adaptive response to alkylating agents in Escherichia coli.

Authors:  B Sedgwick
Journal:  Mol Gen Genet       Date:  1983

10.  Functional map of the alpha subunit of Escherichia coli RNA polymerase: two modes of transcription activation by positive factors.

Authors:  K Igarashi; A Hanamura; K Makino; H Aiba; H Aiba; T Mizuno; A Nakata; A Ishihama
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

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  11 in total

1.  Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features.

Authors:  P Landini; M R Volkert
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

Review 2.  Spore-specific modification of DNA-dependent RNA polymerase alpha subunit in streptomycetes--a new model of transcription regulation.

Authors:  L Najmanová; J Janata; J Kopecký; J Spízek
Journal:  Folia Microbiol (Praha)       Date:  2003       Impact factor: 2.099

Review 3.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

4.  The TyrR protein of Escherichia coli is a class I transcription activator.

Authors:  B Lawley; N Fujita; A Ishihama; A J Pittard
Journal:  J Bacteriol       Date:  1995-01       Impact factor: 3.490

Review 5.  Protein-protein communication within the transcription apparatus.

Authors:  A Ishihama
Journal:  J Bacteriol       Date:  1993-05       Impact factor: 3.490

6.  The C-terminal region of the alpha subunit of Escherichia coli RNA polymerase is required for transcriptional activation of the flagellar level II operons by the FlhD/FlhC complex.

Authors:  X Liu; N Fujita; A Ishihama; P Matsumura
Journal:  J Bacteriol       Date:  1995-09       Impact factor: 3.490

7.  Mutations affecting two adjacent amino acid residues in the alpha subunit of RNA polymerase block transcriptional activation by the bacteriophage P2 Ogr protein.

Authors:  D J Ayers; M G Sunshine; E W Six; G E Christie
Journal:  J Bacteriol       Date:  1994-12       Impact factor: 3.490

8.  The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents.

Authors:  B M Saget; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

9.  Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli.

Authors:  Akira Ishihama; Ayako Kori; Etsuko Koshio; Kayoko Yamada; Hiroto Maeda; Tomohiro Shimada; Hideki Makinoshima; Akira Iwata; Nobuyuki Fujita
Journal:  J Bacteriol       Date:  2014-05-16       Impact factor: 3.490

10.  Alteration of lysine 178 in the hinge region of the Escherichia coli ada protein interferes with activation of ada, but not alkA, transcription.

Authors:  B M Saget; D E Shevell; G C Walker
Journal:  J Bacteriol       Date:  1995-03       Impact factor: 3.490

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