Literature DB >> 8454578

Effects of point mutation in a flexible loop on the stability and enzymatic function of Escherichia coli dihydrofolate reductase.

K Gekko1, K Yamagami, Y Kunori, S Ichihara, M Kodama, M Iwakura.   

Abstract

To elucidate the role of a flexible loop in the stability and function of Escherichia coli dihydrofolate reductase, glycine-121 in the flexible loop (117-131) was substituted to valine and leucine by site-directed mutagenesis. Despite the increased hydrophobicity of the side chains, the free energy changes of unfolding of the two mutants (G121V and G121L) determined by urea denaturation at 15 degrees C were decreased by 1.22 and 0.38 kcal/mol, respectively, compared with that of the wild-type. Thermal denaturation temperature, as monitored by differential scanning calorimetry, was decreased by 2.4 and 5.2 degrees C for G121V and G121L, respectively, accompanying the decrease in enthalpy change of denaturation. These findings indicate that the structure of DHFR is destabilized by the mutations, predominantly due to the large decrease in enthalpy change of denaturation relative to entropy change of denaturation. The steady-state kinetic parameter in the enzyme reaction, Km, was not influenced but kcat was greatly decreased by these mutations, resulting in 240- and 52-fold decreases in kcat/Km for G121V and G121L, respectively. The main effect of the mutations appeared to be modification of the flexibility of the loop due to overcrowding of the bulky side chains, overcoming the enhancement of hydrophobic interaction.

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Year:  1993        PMID: 8454578     DOI: 10.1093/oxfordjournals.jbchem.a124007

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  12 in total

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2.  Mutagenesis of histidine 26 demonstrates the importance of loop-loop and loop-protein interactions for the function of iso-1-cytochrome c.

Authors:  J S Fetrow; U Dreher; D J Wiland; D L Schaak; T L Boose
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

3.  Ligand-Dependent Conformational Dynamics of Dihydrofolate Reductase.

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Authors:  H Huang; C S Yuan; R T Borchardt
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5.  Analysis of the structure and stability of omega loop A replacements in yeast iso-1-cytochrome c.

Authors:  J S Fetrow; S R Horner; W Oehrl; D L Schaak; T L Boose; R E Burton
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6.  The pepsin residue glycine-76 contributes to active-site loop flexibility and participates in catalysis.

Authors:  M Okoniewska; T Tanaka; R Y Yada
Journal:  Biochem J       Date:  2000-07-01       Impact factor: 3.857

7.  Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.

Authors:  Michael R Duff; Nidhi Desai; Michael A Craig; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2019-02-18       Impact factor: 3.162

8.  Site-directed mutagenesis studies of the high-affinity streptavidin-biotin complex: contributions of tryptophan residues 79, 108, and 120.

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9.  A distal mutation perturbs dynamic amino acid networks in dihydrofolate reductase.

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Journal:  Biochemistry       Date:  2013-06-24       Impact factor: 3.162

Review 10.  Keep on moving: discovering and perturbing the conformational dynamics of enzymes.

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Journal:  Acc Chem Res       Date:  2014-12-24       Impact factor: 22.384

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