Literature DB >> 8451639

On the application of the minimal principle to solve unknown structures.

R Miller1, G T DeTitta, R Jones, D A Langs, C M Weeks, H A Hauptman.   

Abstract

The Shake-and-Bake method of structure determination is a new direct methods phasing algorithm based on a minimum-variance, phase invariant residual, which is referred to as the minimal principle. Previously, the algorithm had been applied only to known structures. This algorithm has now been applied to two previously unknown structures that contain 105 and 110 non-hydrogen atoms, respectively. This report focuses on (i) algorithmic and parametric optimizations of Shake-and-Bake and (ii) the determination of two previously unknown structures. Traditional tangent formula phasing techniques were unable to unravel these two new structures.

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Year:  1993        PMID: 8451639     DOI: 10.1126/science.8451639

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  20 in total

1.  Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle.

Authors:  G G Privé; D H Anderson; L Wesson; D Cascio; D Eisenberg
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

2.  Forced coalescence phasing: a method for ab initio determination of crystallographic phases.

Authors:  W B Drendel; R D Davé; S Jain
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-17       Impact factor: 11.205

3.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

4.  Active-site models for complexes of quinolinate synthase with substrates and intermediates.

Authors:  Erika V Soriano; Yang Zhang; Keri L Colabroy; Jennie M Sanders; Ethan C Settembre; Pieter C Dorrestein; Tadhg P Begley; Steven E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-15

5.  Searching with iterated maps.

Authors:  V Elser; I Rankenburg; P Thibault
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

6.  Exploiting tertiary structure through local folds for crystallographic phasing.

Authors:  Massimo Sammito; Claudia Millán; Dayté D Rodríguez; Iñaki M de Ilarduya; Kathrin Meindl; Ivan De Marino; Giovanna Petrillo; Rubén M Buey; José M de Pereda; Kornelius Zeth; George M Sheldrick; Isabel Usón
Journal:  Nat Methods       Date:  2013-09-15       Impact factor: 28.547

7.  Crystallographic ab initio protein structure solution below atomic resolution.

Authors:  Dayté D Rodríguez; Christian Grosse; Sebastian Himmel; César González; Iñaki M de Ilarduya; Stefan Becker; George M Sheldrick; Isabel Usón
Journal:  Nat Methods       Date:  2009-08-16       Impact factor: 28.547

8.  The Shake-and-Bake structure determination of triclinic lysozyme.

Authors:  A M Deacon; C M Weeks; R Miller; S E Ealick
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

9.  V-Amylose at atomic resolution: X-ray structure of a cycloamylose with 26 glucose residues (cyclomaltohexaicosaose).

Authors:  K Gessler; I Usón; T Takaha; N Krauss; S M Smith; S Okada; G M Sheldrick; W Saenger
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

10.  Overcoming the false-minima problem in direct methods: structure determination of the packaging enzyme P4 from bacteriophage phi13.

Authors:  Christoph Meier; Erika J Mancini; Dennis H Bamford; Martin A Walsh; David I Stuart; Jonathan M Grimes
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16
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