Literature DB >> 8451242

Crystallographic analysis of Thr-200-->His human carbonic anhydrase II and its complex with the substrate, HCO3-.

Y Xue1, J Vidgren, L A Svensson, A Liljas, B H Jonsson, S Lindskog.   

Abstract

A complex of carbonic anhydrase (CA) with one of its substrates, bicarbonate, has been studied crystallographically. Human isoenzyme II was mutated at position 200 from threonine to histidine, which results in higher affinity for bicarbonate. The HCO3- ion binds in the active site to the zinc ion as a pseudo-bidentate ligand which gives the metal a coordination geometry between tetrahedral and trigonal bipyramide. The water/hydroxide normally bound with tetrahedral coordination to the zinc is probably replaced by the OH group of the bicarbonate ion. The importance of residues Thr-199 and Glu-106 in controlling the binding orientation of HCO3- is discussed as well as the catalytic mechanism. Both the complex as well as the uncomplexed mutant were studied at 1.9 A resolution.

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Year:  1993        PMID: 8451242     DOI: 10.1002/prot.340150110

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  11 in total

Review 1.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

2.  Crystal structure of E. coli beta-carbonic anhydrase, an enzyme with an unusual pH-dependent activity.

Authors:  J D Cronk; J A Endrizzi; M R Cronk; J W O'neill; K Y Zhang
Journal:  Protein Sci       Date:  2001-05       Impact factor: 6.725

3.  Crystal structure of the dimeric extracellular domain of human carbonic anhydrase XII, a bitopic membrane protein overexpressed in certain cancer tumor cells.

Authors:  D A Whittington; A Waheed; B Ulmasov; G N Shah; J H Grubb; W S Sly; D W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-07       Impact factor: 11.205

4.  Structural and kinetic effects on changes in the CO(2) binding pocket of human carbonic anhydrase II.

Authors:  Dayne West; Chae Un Kim; Chingkuang Tu; Arthur H Robbins; Sol M Gruner; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2012-11-02       Impact factor: 3.162

5.  A short, strong hydrogen bond in the active site of human carbonic anhydrase II.

Authors:  Balendu Sankara Avvaru; Chae Un Kim; Katherine H Sippel; Sol M Gruner; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2010-01-19       Impact factor: 3.162

6.  Roles of the conserved aspartate and arginine in the catalytic mechanism of an archaeal beta-class carbonic anhydrase.

Authors:  Kerry S Smith; Cheryl Ingram-Smith; James G Ferry
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

7.  Entrapment of carbon dioxide in the active site of carbonic anhydrase II.

Authors:  John F Domsic; Balendu Sankara Avvaru; Chae Un Kim; Sol M Gruner; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

Review 8.  Sequestration of carbon dioxide by the hydrophobic pocket of the carbonic anhydrases.

Authors:  John F Domsic; Robert McKenna
Journal:  Biochim Biophys Acta       Date:  2009-08-11

9.  Structural study of X-ray induced activation of carbonic anhydrase.

Authors:  Björn Sjöblom; Maurizio Polentarutti; Kristina Djinovic-Carugo
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-11       Impact factor: 11.205

Review 10.  Crystallography and Its Impact on Carbonic Anhydrase Research.

Authors:  Carrie L Lomelino; Jacob T Andring; Robert McKenna
Journal:  Int J Med Chem       Date:  2018-09-13
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