Literature DB >> 8451239

Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop.

C W Müller1, G E Schulz.   

Abstract

Two mutants of adenylate kinase from Escherichia coli have been crystallized and analyzed by X-ray diffraction at resolutions of 3.4 and 2.4 A, respectively. These mutants are Pro-9-->Leu and Gly-10-->Val. They were selected for their positions in the highly conserved Gly-loop forming a giant anion hole for the beta-phosphate of ATP (GTP) in adenylate kinases, H-ras-p21, and other nucleotide-binding proteins. Mutants at these positions of H-ras-p21 cause cancer. In adenylate kinase these mutations cause smallish changes at the active site. Relating the structural changes to the known changes in catalysis indicates that these mutants hinder the induced-fit movements. As a side result we find that mutant Pro-9-->Leu and wild-type form one very similar crystal packing contact that is crystallographic in one case and noncrystallographic in the other, while all other packing contacts and the space groups are quite at variance.

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Year:  1993        PMID: 8451239     DOI: 10.1002/prot.340150106

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  11 in total

1.  Protein folding and function: the N-terminal fragment in adenylate kinase.

Authors:  S Kumar; Y Y Sham; C J Tsai; R Nussinov
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

2.  Biochemical and X-ray crystallographic studies on shikimate kinase: the important structural role of the P-loop lysine.

Authors:  T Krell; J Maclean; D J Boam; A Cooper; M Resmini; K Brocklehurst; S M Kelly; N C Price; A J Lapthorn; J R Coggins
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

3.  Structural classification of zinc fingers: survey and summary.

Authors:  S Sri Krishna; Indraneel Majumdar; Nick V Grishin
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

4.  Conformational transition pathways explored by Monte Carlo simulation integrated with collective modes.

Authors:  Nigar Kantarci-Carsibasi; Turkan Haliloglu; Pemra Doruker
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

5.  Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions.

Authors:  Oliver Beckstein; Elizabeth J Denning; Juan R Perilla; Thomas B Woolf
Journal:  J Mol Biol       Date:  2009-09-12       Impact factor: 5.469

6.  Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.

Authors:  Arvind Ramanathan; Andrej J Savol; Pratul K Agarwal; Chakra S Chennubhotla
Journal:  Proteins       Date:  2012-08-08

7.  Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

Authors:  Karunesh Arora; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

8.  Enzymatically inactive adenylate kinase 4 interacts with mitochondrial ADP/ATP translocase.

Authors:  Rujuan Liu; Anna-Lena Ström; Jianjun Zhai; Jozsef Gal; Shilai Bao; Weimin Gong; Haining Zhu
Journal:  Int J Biochem Cell Biol       Date:  2008-12-14       Impact factor: 5.085

9.  Mapping the Dynamics Landscape of Conformational Transitions in Enzyme: The Adenylate Kinase Case.

Authors:  Dechang Li; Ming S Liu; Baohua Ji
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

10.  High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer.

Authors:  U Abele; G E Schulz
Journal:  Protein Sci       Date:  1995-07       Impact factor: 6.725

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