Literature DB >> 8425062

Nucleotide sequence of the potato rDNA intergenic spacer.

N Borisjuk1, V Hemleben.   

Abstract

The large intergenic spacer (IGS) of potato rDNA was sequenced and compared to the IGS sequence of tomato. Both spacers exhibit similar length and architecture. Absence of repeated elements down-stream of the putative transcription initiation site (TIS) in potato is compensated by the larger number of subrepeats upstream of the TIS. Especially high level of similarity (86% and 86.5%, respectively) is found in the AT-rich domain containing the TIS and the region approx. 800 bp upstream of the 18S rRNA gene.

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Year:  1993        PMID： 8425062     DOI： 10.1007/bf00019953

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  16 in total

1.  The structure of the large spacer region of the rDNA in Vicia faba and Pisum sativum.

Authors:  A Kato; T Nakajima; J Yamashita; K Yakura; S Tanifuji
Journal:  Plant Mol Biol       Date:  1990-06       Impact factor: 4.076

2.  The complete nucleotide sequence of the intergenic spacer between 25S and 17S rDNAs in rice.

Authors:  F Takaiwa; S Kikuchi; K Oono
Journal:  Plant Mol Biol       Date:  1990-12       Impact factor: 4.076

3.  Length heterogeneity of the rRNA precursor in cucumber (Cucumis sativus).

Authors:  U Zentgraf; M Ganal; V Hemleben
Journal:  Plant Mol Biol       Date:  1990-09       Impact factor: 4.076

4.  Structural and transcriptional characterization of the external spacer of a ribosomal RNA nuclear gene from a higher plant.

Authors:  D Delcasso-Tremousaygue; F Grellet; F Panabieres; E D Ananiev; M Delseny
Journal:  Eur J Biochem       Date:  1988-03-15

5.  Nucleotide sequence of the intergenic spacer (IGS) of the tomato ribosomal DNA.

Authors:  W Schmidt-Puchta; I Günther; H L Sänger
Journal:  Plant Mol Biol       Date:  1989-08       Impact factor: 4.076

6.  Structure and evolution of the intergenic region in a ribosomal DNA repeat unit of wheat.

Authors:  R F Barker; N P Harberd; M G Jarvis; R B Flavell
Journal:  J Mol Biol       Date:  1988-05-05       Impact factor: 5.469

7.  Nucleotide sequence of a 17S (18S) rRNA gene from tomato.

Authors:  T Kiss; A Szkukálek; F Solymosy
Journal:  Nucleic Acids Res       Date:  1989-03-11       Impact factor: 16.971

8.  rDNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications.

Authors:  P Gruendler; I Unfried; K Pascher; D Schweizer
Journal:  J Mol Biol       Date:  1991-10-20       Impact factor: 5.469

9.  The Cucurbita maxima ribosomal DNA intergenic spacer has a complex structure.

Authors:  R J Kelly; A Siegel
Journal:  Gene       Date:  1989-08-15       Impact factor: 3.688

10.  Chloroplast DNA evolution in potato (Solanum tuberosum L.).

Authors:  Y Kawagoe; Y Kikuta
Journal:  Theor Appl Genet       Date:  1991-01       Impact factor: 5.699
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  20 in total

1.  Unraveling the sequence dynamics of the formation of genus-specific satellite DNAs in the family solanaceae.

Authors:  S-H Jo; H-M Park; S-M Kim; H H Kim; C-G Hur; D Choi
Journal:  Heredity (Edinb)       Date:  2010-11-10       Impact factor: 3.821

2.  Structural analysis of rDNA in the genus Nicotiana.

Authors:  N V Borisjuk; Y M Davidjuk; S S Kostishin; G P Miroshnichenco; R Velasco; V Hemleben; R A Volkov
Journal:  Plant Mol Biol       Date:  1997-11       Impact factor: 4.076

3.  Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects.

Authors:  Péter Poczai; Jaakko Hyvönen
Journal:  Mol Biol Rep       Date:  2009-07-21       Impact factor: 2.316

4.  Dropout alignment allows homology recognition and evolutionary analysis of rDNA intergenic spacers.

Authors:  Seongho Ryu; Yoonkyung Do; David H A Fitch; Won Kim; Bud Mishra
Journal:  J Mol Evol       Date:  2008-03-25       Impact factor: 2.395

5.  A specific oligonucleotide of the 5S rDNA spacer and species-specific elements identify symmetric somatic hybrids between Solanum tuberosum and S. pinnatisectum.

Authors:  C Zanke; N Borisjuk; B Ruoss; L Schilde-Rentschler; H Ninnemann; V Hemleben
Journal:  Theor Appl Genet       Date:  1995-04       Impact factor: 5.699

6.  Analysis of the ribosomal RNA gene repeat from the moss Funaria hygrometrica.

Authors:  I Capesius
Journal:  Plant Mol Biol       Date:  1997-02       Impact factor: 4.076

7.  Structural analysis of the rDNA intergenic spacer of Brassica nigra: evolutionary divergence of the spacers of the three diploid Brassica species.

Authors:  S Bhatia; M Singh Negi; M Lakshmikumaran
Journal:  J Mol Evol       Date:  1996-11       Impact factor: 2.395

8.  Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats.

Authors:  Robert M Stupar; Junqi Song; Ahmet L Tek; Zhukuan Cheng; Fenggao Dong; Jiming Jiang
Journal:  Genetics       Date:  2002-11       Impact factor: 4.562

9.  Organization, differential expression and methylation of rDNA in artificial Solanum allopolyploids.

Authors:  Nataliya Y Komarova; Thomas Grabe; Dirk J Huigen; Vera Hemleben; Roman A Volkov
Journal:  Plant Mol Biol       Date:  2004-10       Impact factor: 4.076

10.  Nucleotide sequence, structural organization and length heterogeneity of ribosomal DNA intergenic spacer in Quercus petraea (Matt.) Liebl. and Q. robur L.

Authors:  Natasa Bauer; Tomislav Horvat; Ivan Birus; Vedrana Vicić; Vlatka Zoldos
Journal:  Mol Genet Genomics       Date:  2008-12-04       Impact factor: 3.291
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