Literature DB >> 8415575

Theoretical examination of the mechanism of aldose-ketose isomerization.

Y J Zheng1, K M Merz, G K Farber.   

Abstract

Two mechanisms for an aldose-ketose isomerization have been examined using high level ab initio and semiempirical molecular orbital methods. The proton transfer pathway via an enediol intermediate is shown to be favored in the absence of a metal ion, while the hydride transfer pathway becomes favored in the presence of a metal ion. Our calculations explain why the proton transfer pathway is operative in most aldose-ketose isomerization reactions. These calculations also provide further support for the previously proposed metal ion-mediated hydride transfer mechanism for xylose isomerase.

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Year:  1993        PMID: 8415575     DOI: 10.1093/protein/6.5.479

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  7 in total

1.  Sensitivity of molecular dynamics simulations to the choice of the X-ray structure used to model an enzymatic reaction.

Authors:  Mireia Garcia-Viloca; Tina D Poulsen; Donald G Truhlar; Jiali Gao
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

2.  Ribose 5-phosphate isomerase type B from Trypanosoma cruzi: kinetic properties and site-directed mutagenesis reveal information about the reaction mechanism.

Authors:  Ana L Stern; Emmanuel Burgos; Laurent Salmon; Juan J Cazzulo
Journal:  Biochem J       Date:  2007-01-01       Impact factor: 3.857

3.  The 2.2 A resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction.

Authors:  Rong-Guang Zhang; C Evalena Andersson; Tatiana Skarina; Elena Evdokimova; Aled M Edwards; Andrzej Joachimiak; Alexei Savchenko; Sherry L Mowbray
Journal:  J Mol Biol       Date:  2003-10-03       Impact factor: 5.469

4.  Concerted proton transfer mechanism of Clostridium thermocellum ribose-5-phosphate isomerase.

Authors:  Jun Wang; Weitao Yang
Journal:  J Phys Chem B       Date:  2013-08-02       Impact factor: 2.991

5.  Two-step enzymatic synthesis of 6-deoxy-L-psicose.

Authors:  Liuqing Wen; Kenneth Huang; Yuan Zheng; Junqiang Fang; Shukkoor Muhammed Kondengaden; Peng George Wang
Journal:  Tetrahedron Lett       Date:  2016-07-06       Impact factor: 2.415

6.  Chiral recognition in the gas phase: Mass spectrometric studies of diastereomeric cobalt complexes.

Authors:  T T Dang; S F Pedersen; J A Leary
Journal:  J Am Soc Mass Spectrom       Date:  1994-05       Impact factor: 3.109

7.  Fructoselysine 3-epimerase, an enzyme involved in the metabolism of the unusual Amadori compound psicoselysine in Escherichia coli.

Authors:  Elsa Wiame; Emile Van Schaftingen
Journal:  Biochem J       Date:  2004-03-15       Impact factor: 3.857

  7 in total

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