Literature DB >> 8400830

Conformational analysis of alpha-D-Fuc-(1-->4)-beta-D-GlcNAc-OMe. One-dimensional transient NOE experiments and Metropolis Monte Carlo simulations.

T Weimar1, B Meyer, T Peters.   

Abstract

One-dimensional transient NOE build-up curves were measured for the synthetic disaccharide alpha-D-Fuc-(1-->4)-beta-D-GlcNAc 1 utilizing Gaussian shaped pulses. Simulated build-up curves from Metropolis Monte Carlo simulations were compared to the experimental data. Disaccharide 1 is structurally related to methyl beta-D-maltoside in that it also contains an alpha-(1-->4) linkage, and it has the same configuration of groups around the glycosidic linkage. Analysis of NOEs in methyl beta-D-maltoside is restricted to those observed upon selective excitation of H1' because of severe spectral overlap. The situation is different in 1 where 1H-NMR signals are well separated. Several interglycosidic NOEs were observed. The corresponding build-up curves allowed an accurate determination of the conformational preferences at the glycosidic linkage in 1. Comparison of experimental and theoretical NOE build-up curves showed clearly that rigid minimum-energy models cannot account for the experimental data. The best fit of experimental NOE build-up curves was obtained with theoretical curves from a 2 x 10(6) step Metropolis Monte Carlo simulation with the temperature parameter set at 1000 K. Finally, it was observed that only the interglycosidic NOE H5'/H6-pro-S significantly depends upon varying conformation distributions at the alpha-(1-->4)-glycosidic linkage, induced by choosing different temperature parameters for the Metropolis Monte Carlo simulations.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8400830     DOI: 10.1007/bf00176007

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  16 in total

1.  A conformational study of alpha-L-Rhap-(1----2)-alpha-L-Rhap-(1----OMe) by NMR nuclear Overhauser effect spectroscopy (NOESY) and molecular dynamics calculations.

Authors:  G Widmalm; R A Byrd; W Egan
Journal:  Carbohydr Res       Date:  1992-05-22       Impact factor: 2.104

2.  Conformational analysis of a disaccharide fragment of the polysaccharide antigen of Streptococcus pneumoniae type 1 using n.m.r. spectroscopy and HSEA calculations.

Authors:  K Bock; H Lönn; T Peters
Journal:  Carbohydr Res       Date:  1990-05-01       Impact factor: 2.104

3.  Virtual and solution conformations of oligosaccharides.

Authors:  D A Cumming; J P Carver
Journal:  Biochemistry       Date:  1987-10-20       Impact factor: 3.162

4.  Conformational analysis and molecular dynamics simulations of maltose.

Authors:  S N Ha; L J Madsen; J W Brady
Journal:  Biopolymers       Date:  1988-12       Impact factor: 2.505

5.  Two-dimensional nuclear Overhauser effect: complete relaxation matrix analysis.

Authors:  B A Borgias; T L James
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

6.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

7.  A molecular mechanical force field for the conformational analysis of oligosaccharides: comparison of theoretical and crystal structures of Man alpha 1-3Man beta 1-4GlcNAc.

Authors:  S W Homans
Journal:  Biochemistry       Date:  1990-10-02       Impact factor: 3.162

8.  The solution conformation of sialyl-alpha (2----6)-lactose studied by modern NMR techniques and Monte Carlo simulations.

Authors:  L Poppe; R Stuike-Prill; B Meyer; H van Halbeek
Journal:  J Biomol NMR       Date:  1992-03       Impact factor: 2.835

9.  The conformational analysis of oligosaccharides by H-NMR and HSEA calculation.

Authors:  R U Lemieux; K Bock
Journal:  Arch Biochem Biophys       Date:  1983-02-15       Impact factor: 4.013

10.  Solution conformation of alpha D(1-3)- and alpha D(1-6)-linked oligomannosides using proton nuclear magnetic resonance.

Authors:  J R Brisson; J P Carver
Journal:  Biochemistry       Date:  1983-03-15       Impact factor: 3.162

View more
  2 in total

1.  Assessing glycosidic linkage flexibility: conformational analysis of the repeating trisaccharide unit of Aeromonas salmonicida.

Authors:  T Peters; T Weimar
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

Review 2.  Computational carbohydrate chemistry: what theoretical methods can tell us.

Authors:  R J Woods
Journal:  Glycoconj J       Date:  1998-03       Impact factor: 2.916

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.