Literature DB >> 839855

Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP.

S S Zimmerman, M S Pottle, G Némethy, H A Scheraga.   

Abstract

Conformational energy calculations using ECEPP (Empirical Conformational Energy Program for Peptides) were carried out on the N-acetyl-N'-methylamides of the 20 naturally occurring amino acids. Minimum-energy conformations were located, and the relative conformational energy, librational entropy, and free energy each minimum were calculated. The effects of intrinsic torsional potentials, intramolecular hydrogen bonds, and librational entropy on relative conformational energies and locations of minima are discussed. The results are categorized most easily by use of a new conformational letter code that is introduced here.

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Year:  1977        PMID: 839855     DOI: 10.1021/ma60055a001

Source DB:  PubMed          Journal:  Macromolecules        ISSN: 0024-9297            Impact factor:   5.985


  75 in total

1.  Comparative conformational analysis of peptide libraries.

Authors:  S G Jacchieri
Journal:  Mol Divers       Date:  1998       Impact factor: 2.943

2.  Position dependence of amino acid intrinsic helical propensities II: non-charged polar residues: Ser, Thr, Asn, and Gln.

Authors:  M Petukhov; K Uegaki; N Yumoto; S Yoshikawa; L Serrano
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

3.  Three-helix-bundle protein in a Ramachandran model.

Authors:  A Irbäck; F Sjunnesson; S Wallin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

4.  Amino acid intrinsic alpha-helical propensities III: positional dependence at several positions of C terminus.

Authors:  Michael Petukhov; Koichi Uegaki; Noboru Yumoto; Luis Serrano
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

5.  Low energy conformations for gonadotropin-releasing hormone with D- and L-amino acid substitutions for Gly 6: possible receptor-bound conformations.

Authors:  Matthew R Pincus; Jannie Woo; Regina Monaco; Jack Lubowsky; Robert P Carty
Journal:  Protein J       Date:  2014-12       Impact factor: 2.371

6.  Unblocked statistical-coil tetrapeptides in aqueous solution: quantum-chemical computation of the carbon-13 NMR chemical shifts.

Authors:  Jorge A Vila; Héctor A Baldoni; Daniel R Ripoll; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

7.  Unblocked statistical-coil tetrapeptides and pentapeptides in aqueous solution: a theoretical study.

Authors:  Jorge A Vila; Daniel R Ripoll; Héctor A Baldoni; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

8.  Hybrid global optimization algorithms for protein structure prediction: alternating hybrids.

Authors:  J L Klepeis; M J Pieja; C A Floudas
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

9.  The structure of the carboxyl terminus of the p21 protein. Structural relationship to the nucleotide-binding/transforming regions of the protein.

Authors:  P W Brandt-Rauf; R P Carty; J M Chen; G Lee; S Rackovsky; M R Pincus
Journal:  J Protein Chem       Date:  1990-04

10.  Structural study of binding of flagellin by Toll-like receptor 5.

Authors:  Saul G Jacchieri; Ricardo Torquato; Ricardo R Brentani
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

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