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Literature DB >> 8397009

Construction of the full local similarity map for two biopolymers.

A M Leontovich¹, L I Brodsky, A E Gorbalenya.

Abstract

A novel algorithm for construction of complete maps of local similarity for two biopolymer sequences is described. The algorithm is much faster than the related Altschul-Erickson procedure, it is implemented as the Dot-Helix module within the GeneBee package. Performance of the algorithm is exemplified with the analysis of the polyproteins of two poliovirus type 3 strains and its effectivity is compared to the Staden method. Possible applications of the algorithm are briefly discussed.

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Year: 1993 PMID： 8397009 DOI： 10.1016/0303-2647(93)90062-h

Source DB: PubMed Journal: Biosystems ISSN： 0303-2647 Impact factor: 1.973

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Cited

7 in total

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Journal: Proc Natl Acad Sci U S A Date: 2010-09-10 Impact factor: 11.205

2. Poliovirus 2C protein determinants of membrane binding and rearrangements in mammalian cells.

Authors: N L Teterina; A E Gorbalenya; D Egger; K Bienz; E Ehrenfeld
Journal: J Virol Date: 1997-12 Impact factor: 5.103

3. Processing and evolution of the N-terminal region of the arterivirus replicase ORF1a protein: identification of two papainlike cysteine proteases.

Authors: J A den Boon; K S Faaberg; J J Meulenberg; A L Wassenaar; P G Plagemann; A E Gorbalenya; E J Snijder
Journal: J Virol Date: 1995-07 Impact factor: 5.103

Construction of the full local similarity map for two biopolymers.

1. A binary search approach to whole-genome data analysis.

2. Poliovirus 2C protein determinants of membrane binding and rearrangements in mammalian cells.

3. Processing and evolution of the N-terminal region of the arterivirus replicase ORF1a protein: identification of two papainlike cysteine proteases.

4. Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family.

5. The putative movement domain encoded by nepovirus RNA-2 is conserved in all sequenced nepoviruses.

6. Hepatitis C virus core protein interacts with the cytoplasmic tail of lymphotoxin-beta receptor.

7. The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem.