Literature DB >> 8387998

IS870 requires a 5'-CTAG-3' target sequence to generate the stop codon for its large ORF1.

P Fournier1, F Paulus, L Otten.   

Abstract

The TB regions of the Agrobacterium vitis octopine/cucumopine Ti plasmids constitute a family of related structures. All contain a bacterial insertion element downstream of the TB-iaaM gene, IS870.1. Whereas 43 isolates with octopine/cucumopine Ti plasmids carry only one IS870 copy, strain Ag57 carries a second copy (IS870.2) 3.9 kb to the right of IS870.1 and part of the same TB region. Two other octopine/cucumopine strains carry an IS870 copy on their chromosome (IS870.3). A study of the unmodified insertion sites of IS870.2 and IS870.3, cloned from closely related strains, enabled us to delimit the IS870 elements. IS870 has a size of 1,152 bp and is terminated by inverted repeats. It contains a large open reading frame without a stop codon. However, a stop codon is generated by insertion into the target sequence 5'-CTAG-3'. IS870 is related to five other insertion sequence elements. For two of these, the stop codon of the largest open reading frame is also created by insertion into a CTAG target site.

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Year:  1993        PMID: 8387998      PMCID: PMC204638          DOI: 10.1128/jb.175.10.3151-3160.1993

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  29 in total

1.  Functional analysis of a complex oncogene arrangement in biotype III Agrobacterium tumefaciens strains.

Authors:  B Huss; B Tinland; F Paulus; B Walter; L Otten
Journal:  Plant Mol Biol       Date:  1990-02       Impact factor: 4.076

Review 2.  Transfer and function of T-DNA genes from agrobacterium Ti and Ri plasmids in plants.

Authors:  P Zambryski; J Tempe; J Schell
Journal:  Cell       Date:  1989-01-27       Impact factor: 41.582

3.  Sequence of Agrobacterium tumefaciens biotype III auxin genes.

Authors:  G Bonnard; F Vincent; L Otten
Journal:  Plant Mol Biol       Date:  1991-04       Impact factor: 4.076

4.  Site-specific transposition of insertion sequence IS630.

Authors:  T Tenzen; S Matsutani; E Ohtsubo
Journal:  J Bacteriol       Date:  1990-07       Impact factor: 3.490

5.  Nucleotide sequence analysis of TL-DNA of Agrobacterium rhizogenes agropine type plasmid. Identification of open reading frames.

Authors:  J L Slightom; M Durand-Tardif; L Jouanin; D Tepfer
Journal:  J Biol Chem       Date:  1986-01-05       Impact factor: 5.157

6.  Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping.

Authors:  A Depicker; M De Wilde; G De Vos; R De Vos; M Van Montagu; J Schell
Journal:  Plasmid       Date:  1980-03       Impact factor: 3.466

7.  Agrobacterium plasmids encode structurally and functionally different loci for catabolism of agrocinopine-type opines.

Authors:  G T Hayman; S K Farrand
Journal:  Mol Gen Genet       Date:  1990-09

8.  Role of T-region borders in Agrobacterium host range.

Authors:  F Paulus; B Huss; B Tinland; A Herrmann; J Canaday; L Otten
Journal:  Mol Plant Microbe Interact       Date:  1991 Mar-Apr       Impact factor: 4.171

9.  Preferential transposition of an IS630-associated composite transposon to TA in the 5'-CTAG-3' sequence.

Authors:  T Tenzen; E Ohtsubo
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490

10.  Sequence of the iaa and ipt region of different Agrobacterium tumefaciens biotype III octopine strains: reconstruction of octopine Ti plasmid evolution.

Authors:  F Paulus; J Canaday; F Vincent; G Bonnard; C Kares; L Otten
Journal:  Plant Mol Biol       Date:  1991-04       Impact factor: 4.076

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  7 in total

1.  Sequence and functional analysis of the left-hand part of the T-region from the nopaline-type Ti plasmid, pTiC58.

Authors:  L Otten; J Y Salomone; A Helfer; J Schmidt; P Hammann; P De Ruffray
Journal:  Plant Mol Biol       Date:  1999-12       Impact factor: 4.076

Review 2.  Insertion sequences.

Authors:  J Mahillon; M Chandler
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

3.  Rapid divergence of Agrobacterium vitis octopine-cucumopine Ti plasmids from a recent common ancestor.

Authors:  M van Nuenen; P de Ruffray; L Otten
Journal:  Mol Gen Genet       Date:  1993-07

4.  Characterization of IS1547, a new member of the IS900 family in the Mycobacterium tuberculosis complex, and its association with IS6110.

Authors:  Z Fang; C Doig; N Morrison; B Watt; K J Forbes
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

5.  T-DNA regions from 350 Agrobacterium genomes: maps and phylogeny.

Authors:  Léon Otten
Journal:  Plant Mol Biol       Date:  2021-04-07       Impact factor: 4.076

6.  The Patchy Distribution of Restriction⁻Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria.

Authors:  Matthew S Fullmer; Matthew Ouellette; Artemis S Louyakis; R Thane Papke; Johann Peter Gogarten
Journal:  Genes (Basel)       Date:  2019-03-19       Impact factor: 4.096

7.  Widespread occurrence of natural genetic transformation of plants by Agrobacterium.

Authors:  Tatiana V Matveeva; Léon Otten
Journal:  Plant Mol Biol       Date:  2019-09-21       Impact factor: 4.076

  7 in total

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