Literature DB >> 8386230

CoMFA validation of the superposition of six classes of compounds which block GABA receptors non-competitively.

J A Calder1, J A Wyatt, D A Frenkel, J E Casida.   

Abstract

Thirty-six compounds, representing six different structural classes of insecticides which are known to act at the gamma-aminobutyric acid receptor/chloride ionophore, have been superimposed by methods which maximise the commonality of steric and electrostatic fields. Maximal steric and electrostatic alignment was derived by pairwise comparisons of the different chemical classes with picrotoxinin. To test the validity of the combined superposition, a Comparative Molecular Field Analysis (CoMFA) was carried out within SYBYL, using recently published in vivo and in vitro binding data for insecticides. The resultant partial least-squares (PLS) analysis of sampled steric and electrostatic fields showed a significant statistical correlation with the published biological data. The predictive model obtained was shown to have a greater than 95% chance of significance.

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Year:  1993        PMID: 8386230     DOI: 10.1007/bf00141574

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  3 in total

1.  Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins.

Authors:  R D Cramer; D E Patterson; J D Bunce
Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

2.  Actions of benzodiazepine and beta-carboline derivatives on gamma-aminobutyric acid-activated Cl- channels recorded from membrane patches of neonatal rat cortical neurons in culture.

Authors:  S Vicini; J M Mienville; E Costa
Journal:  J Pharmacol Exp Ther       Date:  1987-12       Impact factor: 4.030

3.  Computer-assisted modeling of the picrotoxinin and gamma-butyrolactone receptor site.

Authors:  W E Klunk; B L Kalman; J A Ferrendelli; D F Covey
Journal:  Mol Pharmacol       Date:  1983-03       Impact factor: 4.436

  3 in total
  8 in total

Review 1.  Molecular similarity and diversity in chemoinformatics: from theory to applications.

Authors:  Ana G Maldonado; J P Doucet; Michel Petitjean; Bo-Tao Fan
Journal:  Mol Divers       Date:  2006-02       Impact factor: 2.943

2.  Structural model for gamma-aminobutyric acid receptor noncompetitive antagonist binding: widely diverse structures fit the same site.

Authors:  Ligong Chen; Kathleen A Durkin; John E Casida
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-10       Impact factor: 11.205

3.  A ligand's-eye view of protein binding.

Authors:  Robert D Clark
Journal:  J Comput Aided Mol Des       Date:  2008-01-24       Impact factor: 3.686

4.  Replacement of steric 6-12 potential-derived interaction energies by atom-based indicator variables in CoMFA leads to models of higher consistency.

Authors:  R T Kroemer; P Hecht
Journal:  J Comput Aided Mol Des       Date:  1995-06       Impact factor: 3.686

5.  A genetic algorithm for flexible molecular overlay and pharmacophore elucidation.

Authors:  G Jones; P Willett; R C Glen
Journal:  J Comput Aided Mol Des       Date:  1995-12       Impact factor: 3.686

6.  Drug design for ever, from hype to hope.

Authors:  G Seddon; V Lounnas; R McGuire; T van den Bergh; R P Bywater; L Oliveira; G Vriend
Journal:  J Comput Aided Mol Des       Date:  2012-01-18       Impact factor: 3.686

7.  Insect RDL Receptor Models for Virtual Screening: Impact of the Template Conformational State in Pentameric Ligand-Gated Ion Channels.

Authors:  Iván Felsztyna; Marcos A Villarreal; Daniel A García; Virginia Miguel
Journal:  ACS Omega       Date:  2022-01-05

8.  Polycyclic dinitriles: a novel class of potent GABAergic insecticides provides a new radioligand, [3H]BIDN.

Authors:  J J Rauh; C W Holyoke; D A Kleier; J K Presnail; E A Benner; D Cordova; M H Howard; A M Hosie; S D Buckingham; H A Baylis; D B Sattelle
Journal:  Invert Neurosci       Date:  1997 Sep-Dec
  8 in total

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