Literature DB >> 8380094

Bacteriophage T4 DNA polymerase mutations that confer sensitivity to the PPi analog phosphonoacetic acid.

L J Reha-Krantz1, R L Nonay, S Stocki.   

Abstract

Mutations that conferred sensitivity to the pyrophosphate analog phosphonoacetic acid in bacteriophage T4 DNA polymerase were identified. The mutations were loosely clustered in four regions of the gene. As found for herpes simplex virus DNA polymerase, T4 mutations that altered sensitivity to phosphonoacetic acid also altered sensitivity to nucleotide analogs. Some of the T4 DNA polymerase mutations also altered the ability of the enzyme to translocate from one template position to the next and affected DNA replication fidelity. Kornberg (A. Kornberg, Science 163:1410-1418, 1969) envisioned a DNA polymerase active center which accommodates primer terminus and template DNAs and the incoming nucleotide. Some mutations identified on the basis of sensitivity to phosphonoacetic acid may be part of such an active center because single amino acid substitutions simultaneously alter several DNA polymerase functions.

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Year:  1993        PMID: 8380094      PMCID: PMC237337     

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  43 in total

1.  Site-specific mutagenesis of a highly conserved region of the herpes simplex virus type 1 DNA polymerase gene.

Authors:  D I Dorsky; C S Crumpacker
Journal:  J Virol       Date:  1990-03       Impact factor: 5.103

2.  Identification of amino acids in herpes simplex virus DNA polymerase involved in substrate and drug recognition.

Authors:  J S Gibbs; H C Chiou; K F Bastow; Y C Cheng; D M Coen
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

3.  Purification of the gene 43, 44, 45, and 62 proteins of the bacteriophage T4 DNA replication apparatus.

Authors:  C F Morris; H Hama-Inaba; D Mace; N K Sinha; B Alberts
Journal:  J Biol Chem       Date:  1979-07-25       Impact factor: 5.157

4.  Active center of DNA polymerase.

Authors:  A Kornberg
Journal:  Science       Date:  1969-03-28       Impact factor: 47.728

5.  Enzymatic synthesis of deoxyribonucleic acid. XXX. Binding of triphosphates to deoxyribonucleic acid polymerase.

Authors:  P T Englund; J A Huberman; T M Jovin; A Kornberg
Journal:  J Biol Chem       Date:  1969-06-10       Impact factor: 5.157

6.  Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP.

Authors:  D L Ollis; P Brick; R Hamlin; N G Xuong; T A Steitz
Journal:  Nature       Date:  1985 Feb 28-Mar 6       Impact factor: 49.962

7.  Control of mutation frequency by bacteriophage T4 DNA polymerase. I. The CB120 antimutator DNA polymerase is defective in strand displacement.

Authors:  F D Gillin; N G Nossal
Journal:  J Biol Chem       Date:  1976-09-10       Impact factor: 5.157

8.  Primary structure of T4 DNA polymerase. Evolutionary relatedness to eucaryotic and other procaryotic DNA polymerases.

Authors:  E K Spicer; J Rush; C Fung; L J Reha-Krantz; J D Karam; W H Konigsberg
Journal:  J Biol Chem       Date:  1988-06-05       Impact factor: 5.157

9.  A unique deoxyguanosine triphosphatase is responsible for the optA1 phenotype of Escherichia coli.

Authors:  B B Beauchamp; C C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

10.  Related functional domains in virus DNA polymerases.

Authors:  B A Larder; S D Kemp; G Darby
Journal:  EMBO J       Date:  1987-01       Impact factor: 11.598

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  20 in total

1.  Dynamics of nucleotide incorporation: snapshots revealed by 2-aminopurine fluorescence studies.

Authors:  Chithra Hariharan; Linda B Bloom; Sandra A Helquist; Eric T Kool; Linda J Reha-Krantz
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

2.  Role of helix P of the human cytomegalovirus DNA polymerase in resistance and hypersusceptibility to the antiviral drug foscarnet.

Authors:  Egor P Tchesnokov; Christian Gilbert; Guy Boivin; Matthias Götte
Journal:  J Virol       Date:  2006-02       Impact factor: 5.103

3.  Identification of a transient excision intermediate at the crossroads between DNA polymerase extension and proofreading pathways.

Authors:  R P Baker; L J Reha-Krantz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

4.  Improving the fidelity of Thermus thermophilus DNA ligase.

Authors:  J Luo; D E Bergstrom; F Barany
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

Review 5.  Rates of spontaneous mutation.

Authors:  J W Drake; B Charlesworth; D Charlesworth; J F Crow
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

6.  Phosphonoformic acid inhibits viral replication by trapping the closed form of the DNA polymerase.

Authors:  Karl E Zahn; Egor P Tchesnokov; Matthias Götte; Sylvie Doublié
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

Review 7.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

8.  Drug-sensitive DNA polymerase δ reveals a role for mismatch repair in checkpoint activation in yeast.

Authors:  Linda J Reha-Krantz; Md Shahjahan P Siddique; Kelly Murphy; Andrea Tam; Michelle O'Carroll; Sam Lou; Amy Schultz; Charles Boone
Journal:  Genetics       Date:  2011-09-16       Impact factor: 4.562

9.  Sensitivity to phosphonoacetic acid: a new phenotype to probe DNA polymerase delta in Saccharomyces cerevisiae.

Authors:  Lei Li; Kelly M Murphy; Uliana Kanevets; Linda J Reha-Krantz
Journal:  Genetics       Date:  2005-03-31       Impact factor: 4.562

10.  Analysis of inhibitors of bacteriophage T4 DNA polymerase.

Authors:  N N Khan; L J Reha-Krantz; G E Wright
Journal:  Nucleic Acids Res       Date:  1994-01-25       Impact factor: 16.971

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