Literature DB >> 8369432

Time-resolved fluorescence of the single tryptophan of Bacillus stearothermophilus phosphofructokinase.

S J Kim1, F N Chowdhury, W Stryjewski, E S Younathan, P S Russo, M D Barkley.   

Abstract

The fluorescence of the single tryptophan in Bacillus stearothermophilus phosphofructokinase was characterized by steady-state and time-resolved techniques. The enzyme is a tetramer of identical subunits, which undergo a concerted allosteric transition. Time-resolved emission spectral data were fitted to discrete and distributed lifetime models. The fluorescence decay is a double exponential with lifetimes of 1.6 and 4.4 ns and relative amplitudes of 40 and 60%. The emission spectra of both components are identical with maxima at 327 nm. The quantum yield is 0.31 +/- 0.01. The shorter lifetime is independent of temperature; the longer lifetime has weak temperature dependence with activation energy of 1 kcal/mol. The fluorescence intensity and decay are the same in H2O and D2O solutions, indicating that the indole ring is not accessible to bulk aqueous solution. The fluorescence is not quenched significantly by iodide, but it is quenched by acrylamide with bimolecular rate constant of 5 x 10(8) M-1 s-1. Static and dynamic light scattering measurements show that the enzyme is a tetramer in solution with hydrodynamic radius of 40 A. Steady-state and time-resolved fluorescence anisotropies indicate that the tryptophan is immobile. The allosteric transition has little effect on the fluorescence properties. The fluorescence results are related to the x-ray structure.

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Year:  1993        PMID: 8369432      PMCID: PMC1225717          DOI: 10.1016/S0006-3495(93)81070-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Picosecond time-resolved fluorescence of ribonuclease T1. A pH and substrate analogue binding study.

Authors:  L X Chen; J W Longworth; G R Fleming
Journal:  Biophys J       Date:  1987-06       Impact factor: 4.033

2.  High-level expression of Bacillus stearothermophilus 6-phosphofructo-1-kinase in Escherichia coli.

Authors:  B A French; B C Valdez; E S Younathan; S H Chang
Journal:  Gene       Date:  1987       Impact factor: 3.688

3.  Thermodynamics of dimer and tetramer formations in rabbit muscle phosphofructokinase.

Authors:  M A Luther; G Z Cai; J C Lee
Journal:  Biochemistry       Date:  1986-12-02       Impact factor: 3.162

4.  Interpretation of fluorescence decays in proteins using continuous lifetime distributions.

Authors:  J R Alcala; E Gratton; F G Prendergast
Journal:  Biophys J       Date:  1987-06       Impact factor: 4.033

5.  Fluorescence lifetime quenching and anisotropy studies of ribonuclease T1.

Authors:  D R James; D R Demmer; R P Steer; R E Verrall
Journal:  Biochemistry       Date:  1985-09-24       Impact factor: 3.162

6.  Comparison of approaches to the instrumental response function in fluorescence decay measurements.

Authors:  Z S Kolber; M D Barkley
Journal:  Anal Biochem       Date:  1986-01       Impact factor: 3.365

7.  Phosphofructokinases from Escherichia coli.

Authors:  D Kotlarz; H Buc
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

8.  Rotational freedom of tryptophan residues in proteins and peptides.

Authors:  J R Lakowicz; B P Maliwal; H Cherek; A Balter
Journal:  Biochemistry       Date:  1983-04-12       Impact factor: 3.162

9.  Internal motion and electron transfer in proteins: a picosecond fluorescence study of three homologous azurins.

Authors:  J W Petrich; J W Longworth; G R Fleming
Journal:  Biochemistry       Date:  1987-05-19       Impact factor: 3.162

10.  Nucleotide sequence of the phosphofructokinase gene from Bacillus stearothermophilus and comparison with the homologous Escherichia coli gene.

Authors:  B A French; S H Chang
Journal:  Gene       Date:  1987       Impact factor: 3.688

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  9 in total

1.  Constrained analysis of fluorescence anisotropy decay:application to experimental protein dynamics.

Authors:  Efraim Feinstein; Gintaras Deikus; Elena Rusinova; Edward L Rachofsky; J B Alexander Ross; William R Laws
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  The effect of introducing small cavities on the allosteric inhibition of phosphofructokinase from Bacillus stearothermophilus.

Authors:  Amy M Whitaker; Gregory D Reinhart
Journal:  Arch Biochem Biophys       Date:  2016-07-29       Impact factor: 4.013

3.  Approaches to teaching fluorescence spectroscopy.

Authors:  C A Royer
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

4.  On the involvement of electron transfer reactions in the fluorescence decay kinetics heterogeneity of proteins.

Authors:  A Ababou; E Bombarda
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

5.  Reevaluation of the accepted allosteric mechanism of phosphofructokinase from Bacillus stearothermophilus.

Authors:  J L Kimmel; G D Reinhart
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

6.  Human glycolipid transfer protein: probing conformation using fluorescence spectroscopy.

Authors:  Xin-Min Li; Margarita L Malakhova; Xin Lin; Helen M Pike; Taeowan Chung; Julian G Molotkovsky; Rhoderick E Brown
Journal:  Biochemistry       Date:  2004-08-10       Impact factor: 3.162

7.  Time-resolved fluorescence study of azurin variants: conformational heterogeneity and tryptophan mobility.

Authors:  S J Kroes; G W Canters; G Gilardi; A van Hoek; A J Visser
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

8.  Interaction of the 18.5-kD isoform of myelin basic protein with Ca2+ -calmodulin: effects of deimination assessed by intrinsic Trp fluorescence spectroscopy, dynamic light scattering, and circular dichroism.

Authors:  David S Libich; Christopher M D Hill; Ian R Bates; F Ross Hallett; Souzan Armstrong; Aleksander Siemiarczuk; George Harauz
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

9.  Picosecond-resolved fluorescent probes at functionally distinct tryptophans within a thermophilic alcohol dehydrogenase: relationship of temperature-dependent changes in fluorescence to catalysis.

Authors:  Corey W Meadows; Ryan Ou; Judith P Klinman
Journal:  J Phys Chem B       Date:  2014-06-03       Impact factor: 2.991

  9 in total

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