Literature DB >> 8356038

Protein-DNA complexes: the cost of recognition.

D E Draper1.   

Abstract

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Year:  1993        PMID： 8356038      PMCID： PMC47154          DOI： 10.1073/pnas.90.16.7429

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  9 in total

1.  The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.

Authors:  D R Lesser; M R Kurpiewski; L Jen-Jacobson
Journal:  Science       Date:  1990-11-09       Impact factor: 47.728

2.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

Review 3.  DNA-protein interactions.

Authors:  P H Von Hippel; J D McGhee
Journal:  Annu Rev Biochem       Date:  1972       Impact factor: 23.643

Review 4.  Recognition of nucleotide sequences.

Authors:  M Yarus
Journal:  Annu Rev Biochem       Date:  1969       Impact factor: 23.643

5.  Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro.

Authors:  G B Koudelka; S C Harrison; M Ptashne
Journal:  Nature       Date:  1987 Apr 30-May 6       Impact factor: 49.962

6.  Facilitated distortion of the DNA site enhances EcoRI endonuclease-DNA recognition.

Authors:  D R Lesser; M R Kurpiewski; T Waters; B A Connolly; L Jen-Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

7.  Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites.

Authors:  M C Mossing; M T Record
Journal:  J Mol Biol       Date:  1985-11-20       Impact factor: 5.469

8.  Specific binding of the lambda phage repressor to lambda DNA.

Authors:  M Ptashne
Journal:  Nature       Date:  1967-04-15       Impact factor: 49.962

9.  Conformation of the TAR RNA-arginine complex by NMR spectroscopy.

Authors:  J D Puglisi; R Tan; B J Calnan; A D Frankel; J R Williamson
Journal:  Science       Date:  1992-07-03       Impact factor: 47.728
  9 in total
  5 in total

1.  Free energy calculations and molecular dynamics simulations of wild-type and variants of the DNA-EcoRI complex.

Authors:  S Sen; L Nilsson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Structure, interaction, dynamics and solvent effects on the DNA-EcoRI complex in aqueous solution from molecular dynamics simulation.

Authors:  S Sen; L Nilsson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

3.  Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein.

Authors:  N Pastor; L Pardo; H Weinstein
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

4.  70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence.

Authors:  Thomas D Schneider
Journal:  Nucleic Acids Res       Date:  2010-06-18       Impact factor: 16.971

5.  Energetics of the protein-DNA-water interaction.

Authors:  Francesca Spyrakis; Pietro Cozzini; Chiara Bertoli; Anna Marabotti; Glen E Kellogg; Andrea Mozzarelli
Journal:  BMC Struct Biol       Date:  2007-01-10
  5 in total

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