Literature DB >> 8349662

Isotope effects and alternative substrate reactivities for tryptophan 2,3-dioxygenase.

J M Leeds1, P J Brown, G M McGeehan, F K Brown, J S Wiseman.   

Abstract

Tryptophan 2,3-dioxygenase (EC 1.13.1.12) is a hemoprotein which catalyzes the first step in the oxidative degradation of tryptophan. The reaction is believed to proceed by addition of O2 across the 2,3-bond of the indole ring, followed by decomposition of the resultant dioxetane to give N-formylkynurenine. A primary D2O isotope effect of 4.4 on Vmax/Km was observed at the pH optimum, pH 7.0. This implies that abstraction of the indole proton is at least partially rate-determining. An inverse secondary isotope effect of 0.96 was observed for L-[2-3H]tryptophan at this pH. The secondary isotope effect signals the formation of the C-O bond at C-2. As the rate of proton abstraction increased with increasing pH, the D2O isotope effect decreased to 1.2 at pH 8.5 and the secondary isotope effect increased to 0.92. The rate-determining steps therefore change with increasing pH, and bond formation at C-2 becomes more rate-limiting. The secondary isotope effect did not change significantly with varying O2 concentration so that substrate binding is primarily ordered with O2 binding first. The specificity of the enzyme towards substituted tryptophans shows that substitution of the phenyl ring of the indole is sterically unfavorable. Steric hindrance is highest at the 4- and 7-positions, while the 5- and 6-positions are less sensitive. 6-Fluoro-L-tryptophan was more reactive than tryptophan, and the increased reactivity can be explained by an electronic effect that enhances of the rate of C-O bond formation at C-2.

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Year:  1993        PMID: 8349662

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  12 in total

1.  Evidence for a ferryl intermediate in a heme-based dioxygenase.

Authors:  Ariel Lewis-Ballester; Dipanwita Batabyal; Tsuyoshi Egawa; Changyuan Lu; Yu Lin; Marcelo A Marti; Luciana Capece; Dario A Estrin; Syun-Ru Yeh
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-29       Impact factor: 11.205

2.  Ex Vivo Analysis of Tryptophan Metabolism Using 19F NMR.

Authors:  Robert J Tombari; Carla M Saunders; Chun-Yi Wu; Lee E Dunlap; Dean J Tantillo; David E Olson
Journal:  ACS Chem Biol       Date:  2019-08-26       Impact factor: 5.100

3.  The first step of the dioxygenation reaction carried out by tryptophan dioxygenase and indoleamine 2,3-dioxygenase as revealed by quantum mechanical/molecular mechanical studies.

Authors:  Luciana Capece; Ariel Lewis-Ballester; Dipanwita Batabyal; Natali Di Russo; Syun-Ru Yeh; Dario A Estrin; Marcelo A Marti
Journal:  J Biol Inorg Chem       Date:  2010-04-02       Impact factor: 3.358

4.  Complete reaction mechanism of indoleamine 2,3-dioxygenase as revealed by QM/MM simulations.

Authors:  Luciana Capece; Ariel Lewis-Ballester; Syun-Ru Yeh; Dario A Estrin; Marcelo A Marti
Journal:  J Phys Chem B       Date:  2012-01-23       Impact factor: 2.991

5.  Fluorine-18-Labeled PET Radiotracers for Imaging Tryptophan Uptake and Metabolism: a Systematic Review.

Authors:  Flóra John; Otto Muzik; Sandeep Mittal; Csaba Juhász
Journal:  Mol Imaging Biol       Date:  2020-08       Impact factor: 3.488

6.  The tryptophan oxidation pathway in mosquitoes with emphasis on xanthurenic acid biosynthesis.

Authors:  Qian Han; Brenda T Beerntsen; Jianyong Li
Journal:  J Insect Physiol       Date:  2006-09-17       Impact factor: 2.354

7.  Stress-induced increase in kynurenic acid as a potential biomarker for patients with schizophrenia and distress intolerance.

Authors:  Joshua Chiappelli; Ana Pocivavsek; Katie L Nugent; Francesca M Notarangelo; Peter Kochunov; Laura M Rowland; Robert Schwarcz; L Elliot Hong
Journal:  JAMA Psychiatry       Date:  2014-07-01       Impact factor: 21.596

8.  Substrate-protein interaction in human tryptophan dioxygenase: the critical role of H76.

Authors:  Dipanwita Batabyal; Syun-Ru Yeh
Journal:  J Am Chem Soc       Date:  2009-03-11       Impact factor: 15.419

9.  Kinetic and Spectroscopic Characterization of the Catalytic Ternary Complex of Tryptophan 2,3-Dioxygenase.

Authors:  Jiafeng Geng; Andrew C Weitz; Kednerlin Dornevil; Michael P Hendrich; Aimin Liu
Journal:  Biochemistry       Date:  2020-07-23       Impact factor: 3.162

Review 10.  Tryptophan-kynurenine pathway is dysregulated in inflammation, and immune activation.

Authors:  Qiongxin Wang; Danxia Liu; Ping Song; Ming-Hui Zou
Journal:  Front Biosci (Landmark Ed)       Date:  2015-06-01
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