Literature DB >> 8347308

Deconvolution of disoriented fiber diffraction data using iterative convolution and local regression.

T T Tibbitts1, D L Caspar.   

Abstract

Computationally efficient procedures are described for the deconvolution of disoriented fiber diffraction data to the resolution limit of measurable intensity in the patterns. The methods can be applied to diffraction data from imperfectly parallel arrays of one-dimensionally periodic rods or two-dimensionally periodic sheets, randomly rotated about their unique axes, to derive a representation of the intensity distribution corresponding to perfectly parallel orientation. With use of angular convolution and local angular regression, a set of uniform cylindrically averaged squared structure factors are iteratively adjusted, subject to a minimum-wavelength constraint, until they produce a disoriented pattern that fits the observed diffraction data. The results from this deconvolution provide a measure of the properly scaled cylindrically averaged squared structure factors, which can be used with other structural information to construct a physically plausible trial model suitable for further refinement. Sample deconvolutions of simulated X-ray patterns from partially oriented gap junction membranes are presented and the results from point-model deconvolutions are compared to those from constrained deconvolutions that began with the transform of a physically plausible trial model.

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Year:  1993        PMID: 8347308     DOI: 10.1107/s0108767392011358

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  4 in total

1.  Like-charge attraction between polyelectrolytes induced by counterion charge density waves.

Authors:  Thomas E Angelini; Hongjun Liang; Willy Wriggers; Gerard C L Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-09       Impact factor: 11.205

2.  Direct observation of counterion organization in F-actin polyelectrolyte bundles.

Authors:  T E Angelini; H Liang; W Wriggers; G C L Wong
Journal:  Eur Phys J E Soft Matter       Date:  2005-04       Impact factor: 1.890

3.  Spherical deconvolution improves quality of single particle reconstruction.

Authors:  Gregory P Kishchenko; Ardean Leith
Journal:  J Struct Biol       Date:  2014-05-16       Impact factor: 2.867

4.  Structural analysis of Alzheimer's beta(1-40) amyloid: protofilament assembly of tubular fibrils.

Authors:  S B Malinchik; H Inouye; K E Szumowski; D A Kirschner
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

  4 in total

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