Literature DB >> 8338833

X-ray scattering using synchrotron radiation shows nitrite reductase from Achromobacter xylosoxidans to be a trimer in solution.

J G Grossmann1, Z H Abraham, E T Adman, M Neu, R R Eady, B E Smith, S S Hasnain.   

Abstract

We demonstrate here the applicability of X-ray scattering for studying molecular conformation of multimeric proteins in solution by using synchrotron radiation to extend the range of data collection to include medium angles (ca. 3-4 degrees). We have been able to define the solution structure of the dissimilatory nitrite reductase of Achromobacter xylosoxidans (AxNiR), an enzyme for which there are conflicting reports as to the nature of its multimeric structure. Quantitative interpretation of the X-ray scattering profile, based on a modeling study using the high-resolution crystal structure data for the nitrite reductase from the related organism Achromobacter cycloclastes (AcNiR), provides a detailed model for the trimeric structure of AxNiR in solution. Sedimentation equilibrium centrifugation gave an M(r) of 103,000, consistent with such a trimeric structure.

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Year:  1993        PMID: 8338833     DOI: 10.1021/bi00080a005

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Accurate SAXS profile computation and its assessment by contrast variation experiments.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; John A Tainer; Andrej Sali
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

2.  Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm.

Authors:  P Chacón; F Morán; J F Díaz; E Pantos; J M Andreu
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

3.  pH-dependence for binding a single nitrite ion to each type-2 copper centre in the copper-containing nitrite reductase of Alcaligenes xylosoxidans.

Authors:  Z H Abraham; B E Smith; B D Howes; D J Lowe; R R Eady
Journal:  Biochem J       Date:  1997-06-01       Impact factor: 3.857

4.  Protein hydration in solution: experimental observation by x-ray and neutron scattering.

Authors:  D I Svergun; S Richard; M H Koch; Z Sayers; S Kuprin; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

Review 5.  Denitrification and its control.

Authors:  S J Ferguson
Journal:  Antonie Van Leeuwenhoek       Date:  1994       Impact factor: 2.271

6.  The blue copper-containing nitrite reductase from Alcaligenes xylosoxidans: cloning of the nirA gene and characterization of the recombinant enzyme.

Authors:  M Prudêncio; R R Eady; G Sawers
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

Review 7.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

Review 8.  Reconstruction of SAXS Profiles from Protein Structures.

Authors:  Daniel K Putnam; Edward W Lowe; Jens Meiler
Journal:  Comput Struct Biotechnol J       Date:  2013-11-26       Impact factor: 7.271

  8 in total

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