Literature DB >> 8332531

The HSSP data base of protein structure-sequence alignments.

C Sander1, R Schneider.   

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Year:  1993        PMID： 8332531      PMCID： PMC309738          DOI： 10.1093/nar/21.13.3105

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


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  5 in total

1.  Database of homology-derived protein structures and the structural meaning of sequence alignment.

Authors:  C Sander; R Schneider
Journal:  Proteins       Date:  1991

2.  Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

Authors:  L Holm; C Sander
Journal:  J Mol Biol       Date:  1991-03-05       Impact factor: 5.469

3.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

4.  The EMBL Network File Server.

Authors:  P J Stoehr; R A Omond
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

5.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505
  5 in total
  16 in total

1.  Comparison of sequence profiles. Strategies for structural predictions using sequence information.

Authors:  L Rychlewski; L Jaroszewski; W Li; A Godzik
Journal:  Protein Sci       Date:  2000-02       Impact factor: 6.725

2.  Identification of protein oligomerization states by analysis of interface conservation.

Authors:  A H Elcock; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

3.  Rationally selected basis proteins: a new approach to selecting proteins for spectroscopic secondary structure analysis.

Authors:  Keith A Oberg; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

4.  Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents.

Authors:  Richard D Emes; Scott A Beatson; Chris P Ponting; Leo Goodstadt
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

5.  Automated prediction of protein function and detection of functional sites from structure.

Authors:  Florencio Pazos; Michael J E Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-29       Impact factor: 11.205

6.  PASS2: a semi-automated database of protein alignments organised as structural superfamilies.

Authors:  V Mallika; Anirban Bhaduri; R Sowdhamini
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  The European Bioinformatics Institute (EBI) databases.

Authors:  D B Emmert; P J Stoehr; G Stoesser; G N Cameron
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

8.  The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program.

Authors:  Michel Schneider; Lydie Lane; Emmanuel Boutet; Damien Lieberherr; Michael Tognolli; Lydie Bougueleret; Amos Bairoch
Journal:  J Proteomics       Date:  2008-11-24       Impact factor: 4.044

9.  Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.

Authors:  Sucharita Dey; Arumay Pal; Mainak Guharoy; Shrihari Sonavane; Pinak Chakrabarti
Journal:  Nucleic Acids Res       Date:  2012-05-27       Impact factor: 16.971

10.  Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009.

Authors:  Michael Y Galperin; Guy R Cochrane
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971
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