Literature DB >> 8312471

A model for multiexponential tryptophan fluorescence intensity decay in proteins.

Z Bajzer1, F G Prendergast.   

Abstract

Tryptophan fluorescence intensity decay in proteins is modeled by multiexponential functions characterized by lifetimes and preexponential factors. Commonly, multiple conformations of the protein are invoked to explain the recovery of two or more lifetimes from the experimental data. However, in many proteins the structure seems to preclude the possibility of multiple conformers sufficiently different from one another to justify such an inference. We present here another plausible multiexponential model based on the assumption that an energetically excited donor surrounded by N acceptor molecules decays by specific radiative and radiationless relaxation processes, and by transferring its energy to acceptors present in or close to the protein matrix. If interactions between the acceptors themselves and back energy transfer are neglected, we show that the intensity decay function contain 2N exponential components characterized by the unperturbed donor lifetime, by energy transfer rates and a probability of occurrence for the corresponding process. We applied this model to the fluorescence decay of holo- and apoazurin, ribonuclease T1, and the reduced single tryptophan mutant (W28F) of thioredoxin. Use of a multiexponential model for the analysis of the fluorescence intensity decay can therefore be justified, without invoking multiple protein conformations.

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Year:  1993        PMID: 8312471      PMCID: PMC1225973          DOI: 10.1016/S0006-3495(93)81325-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

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Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

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Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

5.  Picosecond tryptophan fluorescence of thioredoxin: evidence for discrete species in slow exchange.

Authors:  F Mérola; R Rigler; A Holmgren; J C Brochon
Journal:  Biochemistry       Date:  1989-04-18       Impact factor: 3.162

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Authors:  E T Adman
Journal:  Adv Protein Chem       Date:  1991

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Authors:  R M Hochstrasser; D K Negus
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

8.  Tryptophan sidechain dynamics in hydrophobic oligopeptides determined by use of 13C nuclear magnetic resonance spectroscopy.

Authors:  A J Weaver; M D Kemple; F G Prendergast
Journal:  Biophys J       Date:  1988-07       Impact factor: 4.033

9.  Nanosecond dynamics of horse heart apocytochrome c in aqueous solution as studied by time-resolved fluorescence of the single tryptophan residue (Trp-59).

Authors:  M Vincent; J C Brochon; F Merola; W Jordi; J Gallay
Journal:  Biochemistry       Date:  1988-11-29       Impact factor: 3.162

10.  Conformational heterogeneity of the copper binding site in azurin. A time-resolved fluorescence study.

Authors:  A G Szabo; T M Stepanik; D M Wayner; N M Young
Journal:  Biophys J       Date:  1983-03       Impact factor: 4.033

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  18 in total

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Authors:  J A Schauerte; A Gafni; D G Steel
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

2.  Structural Characterization of Phosducin and Its Complex with the 14-3-3 Protein.

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4.  Protein fluorescence decay: discrete components or distribution of lifetimes? Really no way out of the dilemma?

Authors:  A Vix; H Lami
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

5.  Two-dimensional distributions of activation enthalpy and entropy from kinetics by the maximum entropy method.

Authors:  P J Steinbach
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

6.  Nonnative structure in a peptide model of the unfolded state of superoxide dismutase 1 (SOD1): Implications for ALS-linked aggregation.

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7.  Origin of tryptophan fluorescence lifetimes. Part 2: fluorescence lifetimes origin of tryptophan in proteins.

Authors:  J R Albani
Journal:  J Fluoresc       Date:  2013-08-03       Impact factor: 2.217

8.  The dead-end elimination method, tryptophan rotamers, and fluorescence lifetimes.

Authors:  Mario Hellings; Marc De Maeyer; Stefan Verheyden; Qiang Hao; Els J M Van Damme; Willy J Peumans; Yves Engelborghs
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

9.  Tryptophan dynamics of the FK506 binding protein: time-resolved fluorescence and simulations.

Authors:  N D Silva; F G Prendergast
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

10.  Tryptophan conformations associated with partial unfolding in ribonuclease T1.

Authors:  Samuel L C Moors; Abel Jonckheer; Marc De Maeyer; Yves Engelborghs; Arnout Ceulemans
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

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