Literature DB >> 8293954

Rapid identification of streptomycetes by artificial neural network analysis of pyrolysis mass spectra.

J Chun1, E Atalan, S B Kim, H J Kim, M E Hamid, M E Trujillo, J G Magee, G P Manfio, A C Ward, M Goodfellow.   

Abstract

An artificial neural network was trained to distinguish between three putatively novel species of Streptomyces using normalised, scaled prolysis mass spectra from three representative strains of each of the taxa, each sampled in triplicate. Once trained, the artificial neural network was challenged with spectral data from the original organisms, the 'training set', from additional members of the putative novel taxa and from over a hundred strains representing six other actinomycete genera. All of the streptomycetes were correctly identified but many of the other actinomycetes were mis-identified. A modified network topology was developed to recognise the mass spectral patterns of the non-streptomycete strains. The resultant neural network correctly identified the streptomycetes, whereas all of the remaining actinomycetes were recognised as unknown organisms. The improved artificial neural network provides a rapid, reliable and cost-effective method of identifying members of the three target streptomycete taxa.

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Year:  1993        PMID: 8293954     DOI: 10.1111/j.1574-6968.1993.tb06560.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  3 in total

1.  Rapid authentication of animal cell lines using pyrolysis mass spectrometry and auto-associative artificial neural networks.

Authors:  R Goodacre; D J Rischert; P M Evans; D B Kell
Journal:  Cytotechnology       Date:  1996-01       Impact factor: 2.058

2.  Resolution of batch variations in pyrolysis mass spectrometry of bacteria by the use of artificial neural network analysis.

Authors:  R Freeman; P R Sisson; A C Ward
Journal:  Antonie Van Leeuwenhoek       Date:  1995-10       Impact factor: 2.271

3.  Differentiation of Micromonospora isolates from a coastal sediment in Wales on the basis of Fourier transform infrared spectroscopy, 16S rRNA sequence analysis, and the amplified fragment length polymorphism technique.

Authors:  Hongjuan Zhao; Yankuba Kassama; Michael Young; Douglas B Kell; Royston Goodacre
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

  3 in total

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