Literature DB >> 8281187

An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana.

H Höfte1, T Desprez, J Amselem, H Chiapello, P Rouzé, M Caboche, A Moisan, M F Jourjon, J L Charpenteau, P Berthomieu.   

Abstract

As part of the goal to generate a detailed transcript map for Arabidopsis thaliana, 1152 single run sequences (expressed sequence tags or ESTs) have been determined from cDNA clones taken at random in libraries prepared from different sources of plant material: developing siliques, etiolated seedlings, flower buds, and cultured cells. Eight hundred and ninety-five different genes could be identified, 32% of which showed significant similarity to existing sequences in Arabidopsis and an array of other organisms. These sequences in combination with their positioning on the Arabidopsis genetic map will not only constitute a new set of molecular markers for genome analysis in Arabidopsis but also provide a direct route for the in vivo analysis of their gene products. The sequences have been made available to the public databases.

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Year:  1993        PMID: 8281187     DOI: 10.1046/j.1365-313x.1993.04061051.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  67 in total

1.  A two-component enhancer-inhibitor transposon mutagenesis system for functional analysis of the Arabidopsis genome.

Authors:  E Speulman; P L Metz; G van Arkel; B te Lintel Hekkert; W J Stiekema; A Pereira
Journal:  Plant Cell       Date:  1999-10       Impact factor: 11.277

2.  Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.

Authors:  M Rossberg; K Theres; A Acarkan; R Herrero; T Schmitt; K Schumacher; G Schmitz; R Schmidt
Journal:  Plant Cell       Date:  2001-04       Impact factor: 11.277

3.  Extensive duplication and reshuffling in the Arabidopsis genome.

Authors:  G Blanc; A Barakat; R Guyot; R Cooke; M Delseny
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

4.  AtMRP1 gene of Arabidopsis encodes a glutathione S-conjugate pump: isolation and functional definition of a plant ATP-binding cassette transporter gene.

Authors:  Y P Lu; Z S Li; P A Rea
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

5.  Coordinated plant defense responses in Arabidopsis revealed by microarray analysis.

Authors:  P M Schenk; K Kazan; I Wilson; J P Anderson; T Richmond; S C Somerville; J M Manners
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

6.  Expressed Sequence Tags from Developing Castor Seeds.

Authors:  F. J. Van De Loo; S. Turner; C. Somerville
Journal:  Plant Physiol       Date:  1995-07       Impact factor: 8.340

7.  Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case.

Authors:  Carolyn J Schultz; Michael P Rumsewicz; Kim L Johnson; Brian J Jones; Yolanda M Gaspar; Antony Bacic
Journal:  Plant Physiol       Date:  2002-08       Impact factor: 8.340

8.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Authors:  Brian J Haas; Arthur L Delcher; Stephen M Mount; Jennifer R Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen White
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

9.  Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis.

Authors:  Wei Hu; Yixing Wang; Christian Bowers; Hong Ma
Journal:  Plant Mol Biol       Date:  2003-11       Impact factor: 4.076

Review 10.  The genome of Arabidopsis thaliana.

Authors:  H M Goodman; J R Ecker; C Dean
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

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