Literature DB >> 8264249

Metabolic control design.

L Acerenza1.   

Abstract

The response of metabolic variables to small parameter changes is quantitatively described by the control coefficients. Their values (the control profile) depend on the rate equations of the enzymes which compose the metabolic system. A procedure, called Metabolic Control Design (MCD), is developed which achieves the "inverse", namely to calculate the kinetic properties of the enzymes which would produce a preconceived control profile when they are embedded in the network. It is shown that the lack of interaction between some variable metabolites and enzymes (i.e. some epsilon-elasticity coefficients are zero), together with the well-known conservation and summation relationships, reduce the number of control coefficients to which arbitrary values can be assigned. A choice of the values of these coefficients constitutes the pre-established control profile. The same procedure can also be used as an in situ method to detect unknown interactions between enzymes and metabolites. Finally, we discuss some implications of the results to the evolution of living organisms.

Entities:  

Mesh:

Year:  1993        PMID: 8264249     DOI: 10.1006/jtbi.1993.1177

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  6 in total

1.  Product dependence and bifunctionality compromise the ultrasensitivity of signal transduction cascades.

Authors:  Fernando Ortega; Luis Acerenza; Hans V Westerhoff; Francesc Mas; Marta Cascante
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

2.  Elasticity analysis and design for large metabolic responses produced by changes in enzyme activities.

Authors:  Fernando Ortega; Luis Acerenza
Journal:  Biochem J       Date:  2002-10-01       Impact factor: 3.857

3.  Generalization of the double-modulation method for in situ determination of elasticities.

Authors:  L Acerenza; A Cornish-Bowden
Journal:  Biochem J       Date:  1997-10-01       Impact factor: 3.857

Review 4.  Constraints, Trade-offs and the Currency of Fitness.

Authors:  Luis Acerenza
Journal:  J Mol Evol       Date:  2016-02-26       Impact factor: 2.395

5.  Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations.

Authors:  Pedro de Atauri; Míriam Tarrado-Castellarnau; Josep Tarragó-Celada; Carles Foguet; Effrosyni Karakitsou; Josep Joan Centelles; Marta Cascante
Journal:  PLoS Comput Biol       Date:  2021-07-23       Impact factor: 4.475

6.  Pathway thermodynamics highlights kinetic obstacles in central metabolism.

Authors:  Elad Noor; Arren Bar-Even; Avi Flamholz; Ed Reznik; Wolfram Liebermeister; Ron Milo
Journal:  PLoS Comput Biol       Date:  2014-02-20       Impact factor: 4.475

  6 in total

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