Literature DB >> 8260636

DNA sequence requirement of a TATA element-binding protein from Arabidopsis for transcription in vitro.

F Mukumoto1, S Hirose, H Imaseki, K Yamazaki.   

Abstract

We have analyzed the DNA sequence requirements for the functioning of TATA elements by examining the transcriptional activities associated with 24 promoters, including representatives of each of the 21 point mutations in the consensus sequence from plants, TATATATA, in a HeLa in vitro system and in a chimeric in vitro system in which human TATA-binding protein (hTBP) was replaced by purified TBP of Arabidopsis (aTBP-1). Although the relative transcriptional activities varied among these promoters, both systems gave virtually identical results. Among the mutant TATA elements, those with the sequences TAGAGATA and GAGAGAGA had undetectable activity. The rest had activities that ranged from 7% to 130% of the activity associated with the consensus element. These results suggest the functional conservation of TBP between plants and animals.

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Year:  1993        PMID: 8260636     DOI: 10.1007/bf00021814

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  21 in total

1.  TFIID binds in the minor groove of the TATA box.

Authors:  D B Starr; D K Hawley
Journal:  Cell       Date:  1991-12-20       Impact factor: 41.582

2.  Interaction of TFIID in the minor groove of the TATA element.

Authors:  D K Lee; M Horikoshi; R G Roeder
Journal:  Cell       Date:  1991-12-20       Impact factor: 41.582

3.  Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro.

Authors:  C R Wobbe; K Struhl
Journal:  Mol Cell Biol       Date:  1990-08       Impact factor: 4.272

4.  Compilation and analysis of eukaryotic POL II promoter sequences.

Authors:  P Bucher; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

5.  Light regulation of plant gene expression by an upstream enhancer-like element.

Authors:  M P Timko; A P Kausch; C Castresana; J Fassler; L Herrera-Estrella; G Van den Broeck; M Van Montagu; J Schell; A R Cashmore
Journal:  Nature       Date:  1985 Dec 12-18       Impact factor: 49.962

6.  Factors involved in specific transcription by human RNA polymerase II: analysis by a rapid and quantitative in vitro assay.

Authors:  M Sawadogo; R G Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

7.  Contact points between transcription machinery and the fibroin gene promoter deduced by functional tests of single-base substitution mutants.

Authors:  S Hirose; K Takeuchi; H Hori; T Hirose; S Inayama; Y Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

8.  In vitro characterization of the fibroin gene promoter by the use of single-base substitution mutants.

Authors:  S Hirose; K Takeuchi; Y Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

9.  Eukaryotic gene transcription with purified components.

Authors:  J D Dignam; P L Martin; B S Shastry; R G Roeder
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

10.  A yeast activity can substitute for the HeLa cell TATA box factor.

Authors:  B Cavallini; J Huet; J L Plassat; A Sentenac; J M Egly; P Chambon
Journal:  Nature       Date:  1988-07-07       Impact factor: 49.962

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  10 in total

1.  Implication of 5'-flanking sequence elements in expression of a plant tRNA(Leu) gene.

Authors:  N Choisne; V T Carneiro; G Pelletier; I Small
Journal:  Plant Mol Biol       Date:  1998-01       Impact factor: 4.076

2.  Restoration of TATA-dependent transcription in a heat-inactivated extract of tobacco nuclei by recombinant TATA-binding protein (TBP) from tobacco.

Authors:  N Iwataki; A Hoya; K Yamazaki
Journal:  Plant Mol Biol       Date:  1997-05       Impact factor: 4.076

3.  Mutation spectra of TA*, the major photoproduct of thymidylyl-(3'5')-deoxyadenosine, in Escherichia coli under SOS conditions.

Authors:  X Zhao; J S Taylor
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

4.  Experimentally determined weight matrix definitions of the initiator and TBP binding site elements of promoters.

Authors:  R J Kraus; E E Murray; S R Wiley; N M Zink; K Loritz; G W Gelembiuk; J E Mertz
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

5.  Analysis of the role of 5' and 3' flanking sequence elements upon in vivo expression of the plant tRNATrp genes.

Authors:  B Ulmasov; W Folk
Journal:  Plant Cell       Date:  1995-10       Impact factor: 11.277

6.  TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro.

Authors:  Q Zhu; T Dabi; C Lamb
Journal:  Plant Cell       Date:  1995-10       Impact factor: 11.277

7.  The same Arabidopsis gene encodes both cytosolic and mitochondrial alanyl-tRNA synthetases.

Authors:  H Mireau; D Lancelin; I D Small
Journal:  Plant Cell       Date:  1996-06       Impact factor: 11.277

8.  The TATA-box sequence in the basal promoter contributes to determining light-dependent gene expression in plants.

Authors:  Kanti Kiran; Suraiya A Ansari; Rakesh Srivastava; Niraj Lodhi; Chandra Prakash Chaturvedi; Samir V Sawant; Rakesh Tuli
Journal:  Plant Physiol       Date:  2006-07-14       Impact factor: 8.340

9.  Nitric Oxide Responsive Heavy Metal-Associated Gene AtHMAD1 Contributes to Development and Disease Resistance in Arabidopsis thaliana.

Authors:  Q Muhammad Imran; Noreen Falak; Adil Hussain; Bong-Gyu Mun; Arti Sharma; Sang-Uk Lee; Kyung-Min Kim; Byung-Wook Yun
Journal:  Front Plant Sci       Date:  2016-11-21       Impact factor: 5.753

10.  Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.

Authors:  Dmitry Rasskazov; Irina Chadaeva; Ekaterina Sharypova; Karina Zolotareva; Bato Khandaev; Petr Ponomarenko; Nikolay Podkolodnyy; Natalya Tverdokhleb; Oleg Vishnevsky; Anton Bogomolov; Olga Podkolodnaya; Ludmila Savinkova; Elena Zemlyanskaya; Vadimir Golubyatnikov; Nikolay Kolchanov; Mikhail Ponomarenko
Journal:  Int J Mol Sci       Date:  2022-08-04       Impact factor: 6.208

  10 in total

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