Literature DB >> 8256284

On the origin of enzymatic species.

G A Petsko1, G L Kenyon, J A Gerlt, D Ringe, J W Kozarich.   

Abstract

The diversity of enzyme catalytic function is remarkable, particularly when one considers that ancestral life forms must have started with a much smaller ensemble of proteins. In this article, we discuss the evolution of the mandelate pathway in pseudomonads as an example of how catalytic diversity may have evolved. We suggest that existing enzymes that catalyse the chemistry needed to accomplish a transformation were recruited, followed by the evolution of specific binding.

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Year:  1993        PMID: 8256284     DOI: 10.1016/0968-0004(93)90091-z

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  29 in total

1.  Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

Authors:  S Tsoka; C A Ouzounis
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

2.  Finding evolutionary relations beyond superfamilies: fold-based superfamilies.

Authors:  Keiko Matsuda; Takaaki Nishioka; Kengo Kinoshita; Takeshi Kawabata; Nobuhiro Go
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

3.  Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila.

Authors:  Jianming Zhang; Huyuan Yang; Manyuan Long; Liming Li; Antony M Dean
Journal:  J Mol Evol       Date:  2010-08-31       Impact factor: 2.395

4.  Exploring biosynthetic diversity with trichodiene synthase.

Authors:  L Sangeetha Vedula; Yuxin Zhao; Robert M Coates; Tanetoshi Koyama; David E Cane; David W Christianson
Journal:  Arch Biochem Biophys       Date:  2007-06-28       Impact factor: 4.013

Review 5.  Metabolic interdependence of obligate intracellular bacteria and their insect hosts.

Authors:  Evelyn Zientz; Thomas Dandekar; Roy Gross
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

Review 6.  Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution.

Authors:  Philip R Kensche; Vera van Noort; Bas E Dutilh; Martijn A Huynen
Journal:  J R Soc Interface       Date:  2008-02-06       Impact factor: 4.118

7.  Assembly of an active enzyme by the linkage of two protein modules.

Authors:  A E Nixon; M S Warren; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

8.  Unusual ancestry of dehydratases associated with quinate catabolism in Acinetobacter calcoaceticus.

Authors:  D A Elsemore; L N Ornston
Journal:  J Bacteriol       Date:  1995-10       Impact factor: 3.490

9.  A functional homolog of a yeast tRNA splicing enzyme is conserved in higher eukaryotes and in Escherichia coli.

Authors:  S L Spinelli; H S Malik; S A Consaul; E M Phizicky
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

10.  Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

Authors:  Daniel E Almonacid; Emmanuel R Yera; John B O Mitchell; Patricia C Babbitt
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

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