Literature DB >> 8254739

Inducible and cell type-specific expression of VL30 U3 subgroups correlate with their enhancer design.

M Nilsson1, S Bohm.   

Abstract

The murine VL30 elements constitute one family of retrotransposons represented in 100 to 200 copies that are dispersed among the mouse chromosomes. On the basis of sequence homology, we have subdivided mouse VL30 members into four distinct U3 subgroups. The use of subgroup-specific probes in Northern (RNA) blot analyses shows that individual VL30 U3 subgroups are expressed in a tissue-specific manner. We show by in situ hybridization of mouse skin treated with 12-O-tetradecanoylphorbol-13-acetate (TPA) that VL30 expression is induced in epidermal keratinocytes but not in dermal fibroblasts. Transient transfections of reporter gene plasmids together with in vitro binding analysis indicate that TPA-induced VL30 transcription specific for keratinocytes is mediated by two cooperating sequence motifs in juxtaposed position. One sequence motif is shown to constitutively bind CREB- and Jun-related proteins in both keratinocytes and fibroblasts, whereas the other is a target for TPA-induced c-Rel/p65(NF-kappa B)-binding activity specifically in keratinocytes. These binding sites are found to be conserved within U3 subgroups and individual U3 regions showing induced expression in TPA-treated mouse epidermis. These results together with a sequence comparison between different U3 subgroups indicate that cell type-specific activity of transcription factors known to regulate VL30 transcription and the presence or absence of their cognate binding sites within individual U3 regions determine inducible and cell type-specific VL30 expression. The variable VL30 U3 regions might thus be useful tools to study inducible and cell type-specific transcription in many different cell systems.

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Year:  1994        PMID: 8254739      PMCID: PMC236287     

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  66 in total

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Journal:  J Virol       Date:  1990-02       Impact factor: 5.103

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Journal:  J Virol       Date:  1987-04       Impact factor: 5.103

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Journal:  J Virol       Date:  1987-03       Impact factor: 5.103

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Journal:  Mol Cell Biol       Date:  1989-08       Impact factor: 4.272

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Journal:  J Virol       Date:  1984-10       Impact factor: 5.103

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Journal:  Nature       Date:  1984 Nov 8-14       Impact factor: 49.962

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Journal:  Tumori       Date:  1989-06-30
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  8 in total

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Authors:  G Wolgamot; A D Miller
Journal:  J Virol       Date:  1999-12       Impact factor: 5.103

2.  UVB-induced association of tumor necrosis factor (TNF) receptor 1/TNF receptor-associated factor-2 mediates activation of Rel proteins.

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Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

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Journal:  PLoS Genet       Date:  2010-04-29       Impact factor: 5.917

4.  Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA.

Authors:  Benjamin Herquel; Khalid Ouararhni; Igor Martianov; Stéphanie Le Gras; Tao Ye; Céline Keime; Thierry Lerouge; Bernard Jost; Florence Cammas; Régine Losson; Irwin Davidson
Journal:  Nat Struct Mol Biol       Date:  2013-02-03       Impact factor: 15.369

5.  Sequence analysis of Mus dunni endogenous virus reveals a hybrid VL30/gibbon ape leukemia virus-like structure and a distinct envelope.

Authors:  G Wolgamot; L Bonham; A D Miller
Journal:  J Virol       Date:  1998-09       Impact factor: 5.103

6.  The regulated retrotransposon transcriptome of mammalian cells.

Authors:  Geoffrey J Faulkner; Yasumasa Kimura; Carsten O Daub; Shivangi Wani; Charles Plessy; Katharine M Irvine; Kate Schroder; Nicole Cloonan; Anita L Steptoe; Timo Lassmann; Kazunori Waki; Nadine Hornig; Takahiro Arakawa; Hazuki Takahashi; Jun Kawai; Alistair R R Forrest; Harukazu Suzuki; Yoshihide Hayashizaki; David A Hume; Valerio Orlando; Sean M Grimmond; Piero Carninci
Journal:  Nat Genet       Date:  2009-04-19       Impact factor: 38.330

7.  Genomic analysis of mouse VL30 retrotransposons.

Authors:  Georgios Markopoulos; Dimitrios Noutsopoulos; Stefania Mantziou; Demetrios Gerogiannis; Soteroula Thrasyvoulou; Georgios Vartholomatos; Evangelos Kolettas; Theodore Tzavaras
Journal:  Mob DNA       Date:  2016-05-06

8.  A somatic role for the histone methyltransferase Setdb1 in endogenous retrovirus silencing.

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Journal:  Nat Commun       Date:  2018-04-27       Impact factor: 14.919

  8 in total

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