Literature DB >> 8253999

Discriminatory power of typing schemes based on Simpson's index of diversity for Neisseria gonorrhoeae.

J A Dillon1, M Rahman, K H Yeung.   

Abstract

Simpson's index of diversity was used to produce a single numerical value to compare the abilities of single or combined typing schemes to discriminate between unrelated isolates. This calculation was used to compare the discriminating power of auxotype and serovar determination and plasmid content analysis, either singly or in combination, for Neisseria gonorrhoeae isolates having different antimicrobial susceptibilities (i.e., antibiotic-susceptible isolates and those that produce penicillinase, carry plasmid-mediated resistance to tetracycline, have chromosomally mediated penicillin resistance, or both produce penicillinase and carry plasmid-mediated resistance to tetracycline). Plasmid content analysis and auxotype determination produced the lowest level of discrimination, while a combination of auxotype and serovar typing schemes generally provided higher levels of discrimination. Addition of plasmid content analysis to auxotype and serovar typing provided additional discrimination only with penicillinase-producing isolates. For isolates that carried plasmid-mediated resistance to tetracycline, isolates that were tetracycline resistant, isolates that both produced penicillinase and carried plasmid-mediated resistance to tetracycline, or isolates that had chromosomally mediated penicillin resistance, none of the typing methods produced high discriminatory indices, indicating that these isolates are probably derived from relatively few clones.

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Year:  1993        PMID: 8253999      PMCID: PMC266030          DOI: 10.1128/jcm.31.10.2831-2833.1993

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  2 in total

1.  Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity.

Authors:  P R Hunter; M A Gaston
Journal:  J Clin Microbiol       Date:  1988-11       Impact factor: 5.948

Review 2.  Markers of Neisseria gonorrhoeae for epidemiological studies.

Authors:  E G Sandström; A K Rudén
Journal:  Scand J Infect Dis Suppl       Date:  1990
  2 in total
  16 in total

1.  Evaluation of Neisseria gonorrhoeae multiple-locus variable-number tandem-repeat analysis, N. gonorrhoeae Multiantigen sequence typing, and full-length porB gene sequence analysis for molecular epidemiological typing.

Authors:  Raymond Heymans; Daniel Golparian; Sylvia M Bruisten; Leo M Schouls; Magnus Unemo
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

2.  Genetic variability and distribution of mating type alleles in field populations of Leptosphaeria maculans from France.

Authors:  Lilian Gout; Maria Eckert; Thierry Rouxel; Marie-Hélène Balesdent
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

3.  The laboratory diagnosis of Neisseria gonorrhoeae.

Authors:  Lai-King Ng; Irene E Martin
Journal:  Can J Infect Dis Med Microbiol       Date:  2005-01       Impact factor: 2.471

Review 4.  Review and international recommendation of methods for typing neisseria gonorrhoeae isolates and their implications for improved knowledge of gonococcal epidemiology, treatment, and biology.

Authors:  Magnus Unemo; Jo-Anne R Dillon
Journal:  Clin Microbiol Rev       Date:  2011-07       Impact factor: 26.132

5.  Use of the neisserial lipoprotein (Lip) for subtyping Neisseria gonorrhoeae.

Authors:  D L Trees; A J Schultz; J S Knapp
Journal:  J Clin Microbiol       Date:  2000-08       Impact factor: 5.948

6.  Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance, a Novel Antimicrobial Resistance Multilocus Typing Scheme for Tracking Global Dissemination of N. gonorrhoeae Strains.

Authors:  W Demczuk; S Sidhu; M Unemo; D M Whiley; V G Allen; J R Dillon; M Cole; C Seah; E Trembizki; D L Trees; E N Kersh; A J Abrams; H J C de Vries; A P van Dam; I Medina; A Bharat; M R Mulvey; G Van Domselaar; I Martin
Journal:  J Clin Microbiol       Date:  2017-02-22       Impact factor: 5.948

7.  The usefulness of Neisseria gonorrhoeae strain typing by Pulse-Field Gel Electrophoresis (PFGE) and DNA detection as the forensic evidence in child sexual abuse cases: a case series.

Authors:  Sakda Sathirareuangchai; Peerayuht Phuangphung; Amornrut Leelaporn; Vitharon Boon-yasidhi
Journal:  Int J Legal Med       Date:  2014-05-07       Impact factor: 2.686

8.  Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III.

Authors:  Tom Coenye; Theodore Spilker; Alissa Martin; John J LiPuma
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

9.  The diversity of the opa gene in gonococcal isolates from men who have sex with men.

Authors:  F Howie; H Young; A McMillan
Journal:  Sex Transm Infect       Date:  2004-08       Impact factor: 3.519

10.  Comparison of Neisseria gonorrhoeae multiantigen sequence typing and porB sequence analysis for identification of clusters of N. gonorrhoeae isolates.

Authors:  Mingmin Liao; Sarah Helgeson; Wei-Ming Gu; Yang Yang; Ann M Jolly; Jo-Anne R Dillon
Journal:  J Clin Microbiol       Date:  2008-12-03       Impact factor: 5.948

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