Literature DB >> 8207946

An algorithm combining DNA and protein alignment.

J Hein1.   

Abstract

An algorithm is presented that aligns two DNA sequences minimizing the overall amount of evolution that the associated proteins have experienced. It is generalized to minimizing a weighted average of protein and DNA evolution.

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Year:  1994        PMID： 8207946     DOI： 10.1006/jtbi.1994.1062

Source DB:  PubMed          Journal:  J Theor Biol        ISSN： 0022-5193            Impact factor:   2.691


  6 in total

1.  RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

Authors:  Rasmus Wernersson; Anders Gorm Pedersen
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Genomic alignment.

Authors:  J Hein; J Støvlbaek
Journal:  J Mol Evol       Date:  1994-03       Impact factor: 2.395

3.  MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons.

Authors:  Vincent Ranwez; Sébastien Harispe; Frédéric Delsuc; Emmanuel J P Douzery
Journal:  PLoS One       Date:  2011-09-16       Impact factor: 3.240

4.  Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST.

Authors:  E Michael Gertz; Yi-Kuo Yu; Richa Agarwala; Alejandro A Schäffer; Stephen F Altschul
Journal:  BMC Biol       Date:  2006-12-07       Impact factor: 7.431

5.  Multiple sequence alignments of partially coding nucleic acid sequences.

Authors:  Roman R Stocsits; Ivo L Hofacker; Claudia Fried; Peter F Stadler
Journal:  BMC Bioinformatics       Date:  2005-06-28       Impact factor: 3.169

6.  Aligning coding sequences with frameshift extension penalties.

Authors:  Safa Jammali; Esaie Kuitche; Ayoub Rachati; François Bélanger; Michelle Scott; Aïda Ouangraoua
Journal:  Algorithms Mol Biol       Date:  2017-03-31       Impact factor: 1.405
  6 in total

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