Literature DB >> 8186415

A mathematically designed STS primer without any mismatches for direct sequencing of cosmid DNA clones.

X Tang1, Y Wang, Y Nakata, H O Li, A Fujita, H Gao, A Sarai, K Yokoyama.   

Abstract

We report here a new method for the direct sequencing of large DNA inserts of cosmid clones from human chromosomes using STS primers of 14 nucleotides without any mismatches, which are designed from results of a mathematical analysis. It is clear that STS primer of 14 nucleotides is optimum for direct sequencing of cosmid recombinant DNA clones. We also provide examples of direct sequencing of cosmid clones of human chromosome 21 using these STS primers.

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Year:  1993        PMID: 8186415     DOI: 10.1007/BF01907984

Source DB:  PubMed          Journal:  Jpn J Hum Genet        ISSN: 0916-8478


  17 in total

1.  Direct sequencing of baculovirus genomic DNA: sequence determination of the engineered respiratory syncytial virus chimeric FG gene.

Authors:  J L Slightom; L C Sieu
Journal:  Biotechniques       Date:  1992-07       Impact factor: 1.993

2.  Molecular analysis of chromosome 21 using somatic cell hybrids.

Authors:  D Patterson; M van Keuren; H Drabkin; P Watkins; J Gusella; C Scoggin
Journal:  Ann N Y Acad Sci       Date:  1985       Impact factor: 5.691

3.  Retention of common nucleotide sequences in the ribosomal deoxyribonucleic acid of eukaryotes and some of their physical characteristics.

Authors:  J H Sinclair; D D Brown
Journal:  Biochemistry       Date:  1971-07-06       Impact factor: 3.162

4.  Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty.

Authors:  R J Britten; E H Davidson
Journal:  Q Rev Biol       Date:  1971-06       Impact factor: 4.875

5.  Chromosomal localization of mouse satellite DNA.

Authors:  M L Pardue; J G Gall
Journal:  Science       Date:  1970-06-12       Impact factor: 47.728

6.  The GenBank genetic sequence databank.

Authors:  H S Bilofsky; C Burks; J W Fickett; W B Goad; F I Lewitter; W P Rindone; C D Swindell; C S Tung
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

7.  Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs.

Authors:  S Ikuta; K Takagi; R B Wallace; K Itakura
Journal:  Nucleic Acids Res       Date:  1987-01-26       Impact factor: 16.971

8.  The processing of RNA.

Authors:  J E Darnell
Journal:  Sci Am       Date:  1983-10       Impact factor: 2.142

Review 9.  Repetitive sequences in eukaryotic DNA and their expression.

Authors:  W R Jelinek; C W Schmid
Journal:  Annu Rev Biochem       Date:  1982       Impact factor: 23.643

10.  Down's syndrome as a model disease.

Authors:  C H Scoggin; D Patterson
Journal:  Arch Intern Med       Date:  1982-03
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