Literature DB >> 8183904

Codon reiteration and the evolution of proteins.

H Green1, N Wang.   

Abstract

Sequence data banks have been searched for proteins possessing uninterrupted reiterations of any amino acid. Hydrophilic amino acids, and particularly glutamine, account for a large proportion of the longer reiterants. In the genes for these proteins, the most common reiterants are those that contain poly(CAG), even out-of-frame or, to a lesser degree, those that contain repeated doublets of CA, AG, or GC. The preferential generation of such reiterants requires that DNA strand-specific signals predispose to reiteration and thus to the extension of coding regions.

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Year:  1994        PMID: 8183904      PMCID: PMC43772          DOI: 10.1073/pnas.91.10.4298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  opa: a novel family of transcribed repeats shared by the Notch locus and other developmentally regulated loci in D. melanogaster.

Authors:  K A Wharton; B Yedvobnick; V G Finnerty; S Artavanis-Tsakonas
Journal:  Cell       Date:  1985-01       Impact factor: 41.582

2.  Common properties of proteins encoded by the Antennapedia complex genes of Drosophila melanogaster.

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Journal:  Cold Spring Harb Symp Quant Biol       Date:  1985

3.  The engrailed locus of Drosophila: structural analysis of an embryonic transcript.

Authors:  S J Poole; L M Kauvar; B Drees; T Kornberg
Journal:  Cell       Date:  1985-01       Impact factor: 41.582

4.  Molecular drive: a cohesive mode of species evolution.

Authors:  G Dover
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

5.  Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain.

Authors:  J T Kadonaga; K R Carner; F R Masiarz; R Tjian
Journal:  Cell       Date:  1987-12-24       Impact factor: 41.582

Review 6.  Slipped-strand mispairing: a major mechanism for DNA sequence evolution.

Authors:  G Levinson; G A Gutman
Journal:  Mol Biol Evol       Date:  1987-05       Impact factor: 16.240

7.  Evolution and heterogeneity of the alpha-/beta-type and gamma-type gliadin DNA sequences.

Authors:  T W Okita; V Cheesbrough; C D Reeves
Journal:  J Biol Chem       Date:  1985-07-05       Impact factor: 5.157

8.  Interspecific comparison of the unusually repetitive Drosophila locus mastermind.

Authors:  S J Newfeld; D A Smoller; B Yedvobnick
Journal:  J Mol Evol       Date:  1991-05       Impact factor: 2.395

9.  Structure and evolution of the human involucrin gene.

Authors:  R L Eckert; H Green
Journal:  Cell       Date:  1986-08-15       Impact factor: 41.582

10.  Use of a cDNA expression vector for isolation of mouse interleukin 2 cDNA clones: expression of T-cell growth-factor activity after transfection of monkey cells.

Authors:  T Yokota; N Arai; F Lee; D Rennick; T Mosmann; K Arai
Journal:  Proc Natl Acad Sci U S A       Date:  1985-01       Impact factor: 11.205

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  26 in total

1.  Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications.

Authors:  M V Katti; R Sami-Subbu; P K Ranjekar; V S Gupta
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

2.  Neurological proteins are not enriched for repetitive sequences.

Authors:  Melanie A Huntley; G Brian Golding
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

3.  Natural selection drives the accumulation of amino acid tandem repeats in human proteins.

Authors:  Loris Mularoni; Alice Ledda; Macarena Toll-Riera; M Mar Albà
Journal:  Genome Res       Date:  2010-03-24       Impact factor: 9.043

4.  Homologous and heterologous FISH painting with PARM-PCR chromosome-specific probes in mammals.

Authors:  D Milan; J Riquet; M Yerle; A Goureau; A Schmitz; E P Cribiu; G Frelat; J Gellin
Journal:  Mamm Genome       Date:  1996-03       Impact factor: 2.957

5.  Microsatellite spreading in the human genome: evolutionary mechanisms and structural implications.

Authors:  E Nadir; H Margalit; T Gallily; S A Ben-Sasson
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

6.  Peptides containing glutamine repeats as substrates for transglutaminase-catalyzed cross-linking: relevance to diseases of the nervous system.

Authors:  P Kahlem; C Terré; H Green; P Djian
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

7.  Low-complexity regions in Plasmodium falciparum proteins.

Authors:  E Pizzi; C Frontali
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

8.  Genome-wide analysis of histidine repeats reveals their role in the localization of human proteins to the nuclear speckles compartment.

Authors:  Eulàlia Salichs; Alice Ledda; Loris Mularoni; M Mar Albà; Susana de la Luna
Journal:  PLoS Genet       Date:  2009-03-06       Impact factor: 5.917

9.  Comparative analysis of amino acid repeats in rodents and humans.

Authors:  M Mar Albà; Roderic Guigó
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

10.  Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins.

Authors:  Michelle Simon; John M Hancock
Journal:  Genome Biol       Date:  2009-06-01       Impact factor: 13.583

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