Literature DB >> 8156157

Computer-aided automatic identification of rice chromosomes by image parameters.

Y Kamisugi1, N Furuya, K Iijima, K Fukui.   

Abstract

An automatic, computer-aided method for identification of rice chromosomes was developed based on image parameters obtained by image analysis. Numerical data of the 360 condensation patterns (CPs) or the density profiles of rice chromosomes obtained from 30 chromosomal spreads of haploid rice were subjected to three different discrimination methods for identifying the chromosome: (1) discrimination flow chart, (2) linear discrimination functions, and (3) minimum distance classifier based on standardized Euclidean distance. Discrimination based on the minimum distance classifier resulted in the correct identification of more than 92% of the rice chromosomes. The first and second methods gave a correct identification of 91% and 84%, respectively. It is concluded that the 12 rice chromosomes in most spreads could be identified by a computer.

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Year:  1993        PMID: 8156157     DOI: 10.1007/bf00710773

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  5 in total

1.  Standardization of karyotyping plant chromosomes by a newly developed chromosome image analyzing system (CHIAS).

Authors:  K Fukui
Journal:  Theor Appl Genet       Date:  1986-04       Impact factor: 5.699

2.  Identification and characterization of somatic rice chromosomes by imaging methods.

Authors:  K Iijima; K Kakeda; K Fukui
Journal:  Theor Appl Genet       Date:  1991-05       Impact factor: 5.699

3.  Automatic karyotyping of plant chromosomes by imaging techniques.

Authors:  Y Kamisugi; K Fukui
Journal:  Biotechniques       Date:  1990-03       Impact factor: 1.993

4.  Marker chromosomes commonly observed in the genus Glycine.

Authors:  T Yanagisawa; S Tano; K Fukui; K Harada
Journal:  Theor Appl Genet       Date:  1991-05       Impact factor: 5.699

5.  Somatic chromosome map of rice by imaging methods.

Authors:  K Fukui; K Iijima
Journal:  Theor Appl Genet       Date:  1991-05       Impact factor: 5.699

  5 in total
  6 in total

1.  Visualization of the Brassica self-incompatibility S-locus on identified oilseed rape chromosomes.

Authors:  Y Kamisugi; S Nakayama; C M O'Neil; R J Mathias; M Trick; K Fukui
Journal:  Plant Mol Biol       Date:  1998-12       Impact factor: 4.076

2.  Condensation pattern (CP) analysis of plant chromosomes by an improved chromosome image analysing system, CHIAS III.

Authors:  S Kato; K Fukui
Journal:  Chromosome Res       Date:  1998-09       Impact factor: 5.239

3.  Mapping of C-banded Crepis chromosomes by imaging methods.

Authors:  K Fukui; Y Kamisugi
Journal:  Chromosome Res       Date:  1995-03       Impact factor: 5.239

4.  Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods.

Authors:  S Ha; P H Moore; D Heinz; S Kato; N Ohmido; K Fukui
Journal:  Plant Mol Biol       Date:  1999-04       Impact factor: 4.076

5.  Integration of cytogenetic and genetic linkage maps of Lotus japonicus, a model plant for legumes.

Authors:  Nobuko Ohmido; Akiko Ishimaru; Seiji Kato; Shusei Sato; Satoshi Tabata; Kiichi Fukui
Journal:  Chromosome Res       Date:  2010-01-15       Impact factor: 5.239

6.  Isolation, characterization and chromosome localization of repetitive DNA sequences in bananas (Musa spp.).

Authors:  M Valárik; H Simková; E Hribová; J Safár; M Dolezelová; J Dolezel
Journal:  Chromosome Res       Date:  2002       Impact factor: 4.620

  6 in total

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