Literature DB >> 8116914

SENSOP: a derivative-free solver for nonlinear least squares with sensitivity scaling.

I S Chan1, A A Goldstein, J B Bassingthwaighte.   

Abstract

Nonlinear least squares optimization is used most often in fitting a complex model to a set of data. An ordinary nonlinear least squares optimizer assumes a constant variance for all the data points. This paper presents SENSOP, a weighted nonlinear least squares optimizer, which is designed for fitting a model to a set of data where the variance may or may not be constant. It uses a variant of the Levenberg-Marquardt method to calculate the direction and the length of the step change in the parameter vector. The method for estimating appropriate weighting functions applies generally to 1-dimensional signals and can be used for higher dimensional signals. Sets of multiple tracer outflow dilution curves present special problems because the data encompass three to four orders of magnitude; a fractional power function provides appropriate weighting giving success in parameter estimation despite the wide range.

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Year:  1993        PMID: 8116914      PMCID: PMC3756097          DOI: 10.1007/BF02368642

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  6 in total

1.  Computationally efficient algorithms for convection-permeation-diffusion models for blood-tissue exchange.

Authors:  J B Bassingthwaighte; I S Chan; C Y Wang
Journal:  Ann Biomed Eng       Date:  1992       Impact factor: 3.934

2.  Capillary endothelial transport of uric acid in guinea pig heart.

Authors:  K Kroll; T R Bukowski; L M Schwartz; D Knoepfler; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1992-02

3.  Transcapillary adenosine transport and interstitial adenosine concentration in guinea pig hearts.

Authors:  R D Wangler; M W Gorman; C Y Wang; D F DeWitt; I S Chan; J B Bassingthwaighte; H V Sparks
Journal:  Am J Physiol       Date:  1989-07

4.  Blood-tissue exchange via transport and transformation by capillary endothelial cells.

Authors:  J B Bassingthwaighte; C Y Wang; I S Chan
Journal:  Circ Res       Date:  1989-10       Impact factor: 17.367

5.  Applications of the lagged normal density curve as a model for arterial dilution curves.

Authors:  J B Bassingthwaighte; F H Ackerman; E H Wood
Journal:  Circ Res       Date:  1966-04       Impact factor: 17.367

6.  Model-free deconvolution techniques for estimating vascular transport functions.

Authors:  T A Bronikowski; C A Dawson; J H Linehan
Journal:  Int J Biomed Comput       Date:  1983-09
  6 in total
  25 in total

Review 1.  The Cardiome Project. An integrated view of cardiac metabolism and regional mechanical function.

Authors:  J B Bassingthwaighte; H Qian; Z Li
Journal:  Adv Exp Med Biol       Date:  1999       Impact factor: 2.622

2.  Advection and diffusion of substances in biological tissues with complex vascular networks.

Authors:  D A Beard; J B Bassingthwaighte
Journal:  Ann Biomed Eng       Date:  2000-03       Impact factor: 3.934

3.  Transient transcapillary exchange of water driven by osmotic forces in the heart.

Authors:  Michael R Kellen; James B Bassingthwaighte
Journal:  Am J Physiol Heart Circ Physiol       Date:  2003-05-08       Impact factor: 4.733

4.  GENTEX, a general multiscale model for in vivo tissue exchanges and intraorgan metabolism.

Authors:  James B Bassingthwaighte; Gary M Raymond; James D Ploger; Lisa M Schwartz; Thomas R Bukowski
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2006-06-15       Impact factor: 4.226

5.  Blood flows and metabolic components of the cardiome.

Authors:  J B Bassingthwaighte; Z Li; H Qian
Journal:  Prog Biophys Mol Biol       Date:  1998       Impact factor: 3.667

6.  Modeling blood flow heterogeneity.

Authors:  R B King; G M Raymond; J B Bassingthwaighte
Journal:  Ann Biomed Eng       Date:  1996 May-Jun       Impact factor: 3.934

7.  Modeling regional myocardial flows from residue functions of an intravascular indicator.

Authors:  K Kroll; N Wilke; M Jerosch-Herold; Y Wang; Y Zhang; R J Bache; J B Bassingthwaighte
Journal:  Am J Physiol       Date:  1996-10

8.  Efficient numerical methods for nonlinear-facilitated transport and exchange in a blood-tissue exchange unit.

Authors:  C A Poulain; B A Finlayson; J B Bassingthwaighte
Journal:  Ann Biomed Eng       Date:  1997 May-Jun       Impact factor: 3.934

9.  Reexamining Michaelis-Menten enzyme kinetics for xanthine oxidase.

Authors:  James B Bassingthwaighte; Tamara M Chinn
Journal:  Adv Physiol Educ       Date:  2013-03       Impact factor: 2.288

10.  Left ventricular finite element model bounded by a systemic circulation model.

Authors:  A I Veress; G M Raymond; G T Gullberg; J B Bassingthwaighte
Journal:  J Biomech Eng       Date:  2013-05       Impact factor: 2.097

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