Literature DB >> 8083303

Nucleosome positioning and gene regulation.

Q Lu1, L L Wallrath, S C Elgin.   

Abstract

Recent genetic and biochemical studies have revealed critical information concerning the role of nucleosomes in eukaryotic gene regulation. Nucleosomes package DNA into a dynamic chromatin structure, and by assuming defined positions in chromatin, influence gene regulation. Nucleosomes can serve as repressors, presumably by blocking access to regulatory elements; consequently, the positions of nucleosomes relative to the location of cis-acting elements are critical. Some genes have a chromatin structure that is "preset," ready for activation, while others require "remodeling" for activation. Nucleosome positioning may be determined by multiple factors, including histone-DNA interactions, boundaries defined by DNA structure or protein binding, and higher-order chromatin structure.

Mesh:

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Year:  1994        PMID: 8083303     DOI: 10.1002/jcb.240550110

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  30 in total

1.  Transition between two forms of heterochromatin at plant subtelomeres.

Authors:  E Sýkorová; J Fajkus; M Ito; K Fukui
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

2.  Interplay of yeast global transcriptional regulators Ssn6p-Tup1p and Swi-Snf and their effect on chromatin structure.

Authors:  I M Gavin; R T Simpson
Journal:  EMBO J       Date:  1997-10-15       Impact factor: 11.598

3.  Retinoid-induced chromatin structure alterations in the retinoic acid receptor beta2 promoter.

Authors:  N Bhattacharyya; A Dey; S Minucci; A Zimmer; S John; G Hager; K Ozato
Journal:  Mol Cell Biol       Date:  1997-11       Impact factor: 4.272

4.  Alleviation of histone H1-mediated transcriptional repression and chromatin compaction by the acidic activation region in chromosomal protein HMG-14.

Authors:  H F Ding; M Bustin; U Hansen
Journal:  Mol Cell Biol       Date:  1997-10       Impact factor: 4.272

5.  Variety of genomic DNA patterns for nucleosome positioning.

Authors:  Ilya Ioshikhes; Sergey Hosid; B Franklin Pugh
Journal:  Genome Res       Date:  2011-07-12       Impact factor: 9.043

6.  A wavelet-based method to exploit epigenomic language in the regulatory region.

Authors:  Nha Nguyen; An Vo; Kyoung-Jae Won
Journal:  Bioinformatics       Date:  2013-10-04       Impact factor: 6.937

7.  Xenopus TFIIIA gene transcription is dependent on cis-element positioning and chromatin structure.

Authors:  S L Pfaff; W L Taylor
Journal:  Mol Cell Biol       Date:  1998-07       Impact factor: 4.272

8.  Chromatin structure of the Saccharomyces cerevisiae DNA topoisomerase I promoter in different growth phases.

Authors:  L Rubbi; G Camilloni; M Caserta; E Di Mauro; S Venditti
Journal:  Biochem J       Date:  1997-12-01       Impact factor: 3.857

9.  Naturally extended CT . AG repeats increase H-DNA structures and promoter activity in the smooth muscle myosin light chain kinase gene.

Authors:  Yoo-Jeong Han; Primal de Lanerolle
Journal:  Mol Cell Biol       Date:  2007-11-08       Impact factor: 4.272

10.  cis-acting sequences located downstream of the human immunodeficiency virus type 1 promoter affect its chromatin structure and transcriptional activity.

Authors:  A el Kharroubi; M A Martin
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

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