Literature DB >> 8075541

1H, 15N, 13C and 13CO resonance assignments and secondary structure of villin 14T, a domain conserved among actin-severing proteins.

M A Markus1, T Nakayama, P Matsudaira, G Wagner.   

Abstract

Sequence-specific assignments have been made for the 1H, 15N, 13C and 13CO resonances of 14T, the 126-residue amino-terminal domain of the actin-severing protein villin. Villin is a member of a family of proteins that regulate cytoskeletal actin by severing, capping and nucleating actin filaments. Actin binding is dependent on calcium and disrupted by phosphatidyl inositol 4,5-bisphosphate. Actin-severing proteins are built from three or six repeats of a conserved domain, represented by 14T. Expression in Escherichia coli facilitated incorporation of 15N and 13C isotopes and application of triple-resonance, backbone-directed strategies for the sequential assignments. Elements of regular secondary structure have been identified by characteristic patterns of NOE cross peaks and values of vicinal 3JHNH alpha coupling constants. Amide protons that exchange slowly (rates less than 1.0 x 10(-4) per min) are concentrated in the central beta-sheet and the second and third alpha-helices, suggesting that these elements of secondary structure form very stable hydrogen bonds. Assignments for the amide nitrogens and protons have been examined as a function of pH and calcium concentration. Based on the conservation of chemical shifts in the core of the domain, villin 14T maintains the same overall fold in the pH range from 4.15 to 6.91 and the calcium range from 0 to 50 mM. The calcium data indicate the presence of two calcium-binding sites and suggest their locations.

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Year:  1994        PMID: 8075541     DOI: 10.1007/bf00156620

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

Review 1.  An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by nuclear magnetic resonance.

Authors:  T F Havel
Journal:  Prog Biophys Mol Biol       Date:  1991       Impact factor: 3.667

2.  Solution structure of villin 14T, a domain conserved among actin-severing proteins.

Authors:  M A Markus; T Nakayama; P Matsudaira; G Wagner
Journal:  Protein Sci       Date:  1994-01       Impact factor: 6.725

3.  Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta.

Authors:  D Marion; P C Driscoll; L E Kay; P T Wingfield; A Bax; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1989-07-25       Impact factor: 3.162

4.  An actin footprint on villin. Single site substitutions in a cluster of basic residues inhibit the actin severing but not capping activity of villin.

Authors:  M V de Arruda; H Bazari; M Wallek; P Matsudaira
Journal:  J Biol Chem       Date:  1992-06-25       Impact factor: 5.157

5.  Secondary structure and topology of Acanthamoeba profilin I as determined by heteronuclear nuclear magnetic resonance spectroscopy.

Authors:  S J Archer; V K Vinson; T D Pollard; D A Torchia
Journal:  Biochemistry       Date:  1993-07-06       Impact factor: 3.162

6.  Support of 1H NMR assignments in proteins by biosynthetically directed fractional 13C-labeling.

Authors:  T Szyperski; D Neri; B Leiting; G Otting; K Wüthrich
Journal:  J Biomol NMR       Date:  1992-07       Impact factor: 2.835

7.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

8.  Characterization of the three-dimensional solution structure of human profilin: 1H, 13C, and 15N NMR assignments and global folding pattern.

Authors:  W J Metzler; K L Constantine; M S Friedrichs; A J Bell; E G Ernst; T B Lavoie; L Mueller
Journal:  Biochemistry       Date:  1993-12-21       Impact factor: 3.162

9.  Nucleotide sequence of pig plasma gelsolin. Comparison of protein sequence with human gelsolin and other actin-severing proteins shows strong homologies and evidence for large internal repeats.

Authors:  M Way; A Weeds
Journal:  J Mol Biol       Date:  1988-10-20       Impact factor: 5.469

10.  Evidence for functional homology in the F-actin binding domains of gelsolin and alpha-actinin: implications for the requirements of severing and capping.

Authors:  M Way; B Pope; A G Weeds
Journal:  J Cell Biol       Date:  1992-11       Impact factor: 10.539

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  3 in total

1.  Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

Authors:  P Güntert; M Salzmann; D Braun; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

2.  Refined structure of villin 14T and a detailed comparison with other actin-severing domains.

Authors:  M A Markus; P Matsudaira; G Wagner
Journal:  Protein Sci       Date:  1997-06       Impact factor: 6.725

3.  Protein phi and psi dihedral restraints determined from multidimensional hypersurface correlations of backbone chemical shifts and their use in the determination of protein tertiary structures.

Authors:  R D Beger; P H Bolton
Journal:  J Biomol NMR       Date:  1997-09       Impact factor: 2.835

  3 in total

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