Literature DB >> 8058742

Matrix decompositions of two-dimensional nuclear magnetic resonance spectra.

T F Havel1, I Najfeld, J X Yang.   

Abstract

Two-dimensional NMR spectra are rectangular arrays of real numbers, which are commonly regarded as digitized images to be analyzed visually. If one treats them instead as mathematical matrices, linear algebra techniques can also be used to extract valuable information from them. This matrix approach is greatly facilitated by means of a physically significant decomposition of these spectra into a product of matrices--namely, S = PAPT. Here, P denotes a matrix whose columns contain the digitized contours of each individual peak or multiple in the one-dimensional spectrum, PT is its transpose, and A is an interaction matrix specific to the experiment in question. The practical applications of this decomposition are considered in detail for two important types of two-dimensional NMR spectra, double quantum-filtered correlated spectroscopy and nuclear Overhauser effect spectroscopy, both in the weak-coupling approximation. The elements of A are the signed intensities of the cross-peaks in a double quantum-filtered correlated spectrum, or the integrated cross-peak intensities in the case of a nuclear Overhauser effect spectrum. This decomposition not only permits these spectra to be efficiently simulated but also permits the corresponding inverse problems to be given an elegant mathematical formulation to which standard numerical methods are applicable. Finally, the extension of this decomposition to the case of strong coupling is given.

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Year:  1994        PMID: 8058742      PMCID: PMC44524          DOI: 10.1073/pnas.91.17.7962

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  3 in total

1.  Multivariate data analysis of NMR data.

Authors:  U Edlund; H Grahn
Journal:  J Pharm Biomed Anal       Date:  1991       Impact factor: 3.935

2.  SESAME: a least-squares approach to the evaluation of protein structures computed from NMR data.

Authors:  J X Yang; T F Havel
Journal:  J Biomol NMR       Date:  1993-05       Impact factor: 2.835

3.  Systematic application of high-resolution, phase-sensitive two-dimensional 1H-NMR techniques for the identification of the amino-acid-proton spin systems in proteins. Rabbit metallothionein-2.

Authors:  D Neuhaus; G Wagner; M Vasák; J H Kägi; K Wüthrich
Journal:  Eur J Biochem       Date:  1985-09-02
  3 in total
  3 in total

1.  Optimizing resolution in multidimensional NMR by three-way decomposition.

Authors:  Vladislav Yu Orekhov; Ilghiz Ibraghimov; Martin Billeter
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

2.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

Authors:  David A Snyder; Fengli Zhang; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

3.  An evaluation of least-squares fits to COSY spectra as a means of estimating proton-proton coupling constants. I. Simulated test problems.

Authors:  J X Yang; T F Havel
Journal:  J Biomol NMR       Date:  1994-11       Impact factor: 2.835

  3 in total

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